Pinned Repositories
crAssphage_project
Source code for the crAssphage project
kraken
Kraken taxonomic sequence classification system
masame
Code to run the shiny functions for the MASAME suite
MetagenomeCourse2019
Course material for the metagenomics course
Metagenomics
Metagenome analysis tools
MobileGeneticElementDatabase
Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
parse_diamond
A simple script to parse DIAMOND results in to a data frame
pommunity
A tool to produce sequences with Roche/454 errors to create realistic pseudo-microbial communities.
qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
jnesme's Repositories
jnesme/crAssphage_project
Source code for the crAssphage project
jnesme/kraken
Kraken taxonomic sequence classification system
jnesme/masame
Code to run the shiny functions for the MASAME suite
jnesme/MetagenomeCourse2019
Course material for the metagenomics course
jnesme/Metagenomics
Metagenome analysis tools
jnesme/MobileGeneticElementDatabase
Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
jnesme/oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
jnesme/parse_diamond
A simple script to parse DIAMOND results in to a data frame
jnesme/pommunity
A tool to produce sequences with Roche/454 errors to create realistic pseudo-microbial communities.
jnesme/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
jnesme/STAMP
Statistical Analysis of Metagenomic Profiles