FileNotFoundError: blast.tab

Question

FileNotFoundError: blast.tab

Closed this issue 2 years ago · 3 comments

Hi there

I was wondering if you know what caused this issue, "FileNotFoundError: [Errno 2] No such file or directory: DIR/blast.tab"?

Thanks!

Answer 1 · 2022-08-19T10:25:23.000Z

Hi TianyiChang

It looks like a bug that appears when no repeat matches any sequences in the input. You can get around it by adding the --skip_blast argument when running cctyper. I will fix it in the next version.

Thank you for reporting!

Answer 2 · 2022-08-19T20:58:37.000Z

I see. Thanks a lot!

…

On Aug 19 2022, at 6:25 AM, Jakob Russel ***@***.***> wrote: Hi TianyiChang It looks like a bug that appears when no repeat matches any sequences in the input. You can get around it by adding the --skip_blast argument when running cctyper. I will fix it in the next version. Thank you for reporting! — Reply to this email directly, view it on GitHub (#30 (comment)), or unsubscribe (https://github.com/notifications/unsubscribe-auth/AHXAGGO4DZYL3JY3CRTV7A3VZ5OJ5ANCNFSM567F37KA). You are receiving this because you authored the thread.

Answer 3 · 2022-08-24T12:27:24.000Z

Hi TianyiChang

I cannot reproduce that error. On my system a blast.tab file is always produced, even without matches.
Can you provide information on the version of cctyper and dependecies, and maybe a small example file which produce an error

Best,
Jakob