noamteyssier/sgcount

Issues

• warn user which sgRNA is missing from the gene map

  #79 opened 5 months ago by noamteyssier
  0

• label the files as basenames by default

  #74 opened a year ago by noamteyssier
  0

• propagate errors through the iterators

  #75 opened a year ago by noamteyssier
  0

• use needletail for fx record parsing

  #73 opened a year ago by noamteyssier
  0

• Better error handling when sequences have undersized lengths

  #70 opened 2 years ago by noamteyssier
  0

• Allow for multiple sized sequences

  #68 opened 2 years ago by noamteyssier
  0

• Install within `conda` environment

  #50 opened 2 years ago by abearab
  1

• Report Summary Statistics

  #51 opened 2 years ago by noamteyssier
  0

• modify to accept CRISPR v3 libraries

  #44 opened 3 years ago by noamteyssier
  0

• add option for removing full-zero results

  #65 opened 2 years ago by noamteyssier
  0

• broken link

  #63 opened 2 years ago by abearab
  0

• Errors for multi-spacer library

  #57 opened 2 years ago by abearab
  1

• increase testing coverage

  #61 opened 2 years ago by noamteyssier
  0

• better error handling for over-length sequence size in library

  #59 opened 2 years ago by noamteyssier
  0

• fix bug in docs for multiple sgrna => same gene names

  #58 opened 2 years ago by noamteyssier
  0

• update toml to use exact version numbers

  #55 opened 3 years ago by noamteyssier
  0

• Remove example generation script from repo

  #53 opened 3 years ago by noamteyssier
  0

• Create a better readme

  #48 opened 3 years ago by noamteyssier
  1

• Error `ndarray: index out of bounds`

  #49 opened 3 years ago by abearab
  4

• check for one-position off

  #45 opened 3 years ago by noamteyssier
  1

• bug in output with multiple files

  #43 opened 3 years ago by noamteyssier
  0

• set exact matching as default

  #41 opened 3 years ago by noamteyssier
  0

• Perform entropy and offset matching for each sample independently

  #28 opened 3 years ago by noamteyssier
  0

• add option for sgrna to gene table

  #36 opened 3 years ago by noamteyssier
  0

• update with pedantic clippy linting

  #38 opened 3 years ago by noamteyssier
  0

• replace hash with fxhash

  #33 opened 3 years ago by noamteyssier
  0

• measuring linting errors

  #34 opened 3 years ago by noamteyssier
  0

• Update fxread usage for 0.2

  #31 opened 3 years ago by noamteyssier
  0

• validate that all path names exist before starting run

  #27 opened 3 years ago by noamteyssier
  0

• Add reverse complement functionality

  #14 opened 3 years ago by noamteyssier
  0

• Remove Trimmer

  #25 opened 3 years ago by noamteyssier
  0

• migrate from std hashmap and hashsets to ahash

  #23 opened 3 years ago by noamteyssier
  0

• show total time elapsed when finished

  #19 opened 3 years ago by noamteyssier
  0

• catch when non-unique sequences are found in the index

  #21 opened 3 years ago by noamteyssier
  0

• implement individual file counters in parallel

  #18 opened 3 years ago by noamteyssier
  0

• add progress bar functionality and optional quiet

  #10 opened 3 years ago by noamteyssier
  0

• add offset calculation as subcommand

  #11 opened 3 years ago by noamteyssier
  0

• Add documentation

  #9 opened 3 years ago by noamteyssier
  0

• short circuit hamming distance calculation

  #3 opened 3 years ago by noamteyssier
  1

• replace hamming calculation with a permutation hash

  #7 opened 3 years ago by noamteyssier
  0

• add testing suite

  #4 opened 3 years ago by noamteyssier
  0

• add in hamming distance

  #1 opened 3 years ago by noamteyssier
  0