carpenter-lab
There are 14 repositories under carpenter-lab topic.
cytomining/pycytominer
Python package for processing image-based profiling data
broadinstitute/cell-health
Predicting Cell Health with Morphological Profiles
broadinstitute/imaging-platform-pipelines
Cell Painting and other pipelines from the Imaging Platform
broadinstitute/profiling-resistance-mechanisms
Predicting pharmacodynamic responses to cancer drugs using cell morphology
broadinstitute/cmQTL
High-dimensional phenotyping to define the genetic basis of cellular morphology
broadinstitute/pooled-cell-painting-profiling-recipe
:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
broadinstitute/cell-painting-vae
Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic
carpenterlab/open-science-rules
Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research
broadinstitute/imaging-bbbc
Freely Downloadable Microscopy Image Sets
broadinstitute/pooled-cell-painting-profiling-template
:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
CellProfiler/cellprofiler.github.com
CellProfiler Website
broadinstitute/cytominer_scripts
Scripts for processing morphological profiling data using cytominer
broadinstitute/imaging-backup-scripts
Scripts to backup data for the Imaging Platform
broadinstitute/pe2loaddata
Script to parse a Phenix metadata XML file and generate a .CSV for CellProfiler's loaddata module