BMIRDS/deepslide

Issues

• 4_test.py error when using patch-based preprocessed dataset

  #62 opened 23 days ago by c25kenneth
  2

• NameError:

  #20 opened 4 years ago by Muralidare
  21

• Train Data

  #61 opened 6 months ago by wxyz-wjx
  2

• Pytorch CPU and conda environment conflicts

  #60 opened 7 months ago by Jbartlett6
  1

• RuntimeError: An attempt has been made to start a new process before the current process has finished its bootstrapping phase.

  #59 opened 7 months ago by VictorLee94
  1

• Overfitting when trying to reproduce on 143 histology slides.

  #56 opened a year ago by iCherishxixixi
  1

• IndexError: max(): Expected reduction dim 1 to have non-zero size

  #57 opened a year ago by carloelle
  6

• 3_repiece_jpg_tiles.py how to work?

  #53 opened 2 years ago by hemo0826
  2

• Integrating my own model

  #51 opened 2 years ago by timofeiryko
  2

• 6_visualize.py

  #49 opened 2 years ago by enochsol
  4

• CUDA_VISIBLE_DEVICES=0 python code/4_test.py --auto_select False

  #50 opened 2 years ago by liqiang1102
  4

• Dataset Download Problem

  #52 opened 2 years ago by Rukhmini
  4

• 3_train.py

  #46 opened 2 years ago by enochsol
  10

• 4_test.py

  #47 opened 2 years ago by enochsol
  25

• Data size

  #44 opened 2 years ago by enochsol
  4

• 2_process_patches.py

  #45 opened 2 years ago by enochsol
  4

• Training Issues

  #43 opened 2 years ago by Tejussurendran
  2

• Crop the WSI

  #41 opened 2 years ago by enochsol
  17

• Data Preprocessing error

  #40 opened 2 years ago by MohamedOmar2020
  27

• Model checkpoints

  #39 opened 3 years ago by gabrieldernbach
  1

• ZeroDivisionError: float division by zero

  #38 opened 3 years ago by websterlincoln
  1

• About Dartmouth Lung Cancer Histology Dataset

  #37 opened 3 years ago by chenqz1998
  7

• inference instructions; pretrained weights (see https://github.com/BMIRDS/deepslide/issues/35)

  #36 opened 3 years ago by GeorgeBatch
  1

• pretrained model

  #35 opened 3 years ago by luciantunez
  1

• could you please share your data with me? thank you!

  #34 opened 3 years ago by cl2227619761
  1

• Question about path_mean and path_std

  #33 opened 3 years ago by HardworkingLittlequ
  6

• Question about path_mean and path_std

  #32 opened 3 years ago by HardworkingLittlequ
  0

• About running code from 1st one, I got a problem.

  #30 opened 4 years ago by mofatuzi
  11

• question about method

  #31 opened 4 years ago by wangtaoknight
  2

• Newer scipy versions: cannot import name 'imsave' from 'scipy' (in preprocessing script 2)

  #29 opened 4 years ago by LiesMH
  1

• Reduce LR on Plateau

  #25 opened 4 years ago by jasonwei20
  1

• The weird `acinar/acinar/asdf.png` convention can be removed

  #26 opened 4 years ago by jasonwei20
  0

• Single Layer TIF format

  #3 opened 5 years ago by jlevy44
  2

• FileNotFoundError: [WinError 3]

  #28 opened 4 years ago by RajatGarg45
  0

• AttributeError: Can't pickle local object 'compute_stats.<locals>.MyDataset'

  #27 opened 4 years ago by SoNanm
  3

• Fixing print statement

  #24 opened 4 years ago by jasonwei20
  4

• Validation Confusion Matrix on 3_train.py

  #22 opened 4 years ago by braulioarredondo
  11

• Bug in print statements

  #23 opened 4 years ago by jasonwei20
  2

• Extra JPG tile creation when width/height of SVS divisible by window size

  #15 opened 4 years ago by mbluestone
  1

• Create subfolders in 'all_wsi'

  #19 opened 5 years ago by Shawnmhy
  1

• About anonymized version of this dataset

  #16 opened 5 years ago by Klunio
  1

• Parallelize and pipeline preprocessing scripts

  #8 opened 5 years ago by jlevy44
  5

• Data preprocessing problem

  #6 opened 5 years ago by Tato14
  1

• the rest of patches

  #13 opened 5 years ago by jennie106
  1

• A problem for input

  #11 opened 5 years ago by cxiang97
  1

• Recover Original SVS Coordinates from Patches

  #10 opened 5 years ago by jlevy44
  1

• issue about all_wsi

  #9 opened 5 years ago by Daisy5566
  1

• Data acquisition help

  #7 opened 5 years ago by chuxiang93
  1

• Attention based classification in ResNet18

  #5 opened 5 years ago by Tato14
  1

• Use pre-trained ResNet with frozen layers

  #4 opened 5 years ago by Tato14
  2