Pinned Repositories
MethylNet
Modular framework for deep learning predictions on methylation data.
PyMethylProcess
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
GCN4R
GCN4R Package
InteractionTransformer
Extract meaningful interactions from machine learning models to obtain machine-learning performance with statistical model interpretability.
Joshua-Levy-Synteny-Analysis
Integrated Analysis of Synteny (Multiple Synteny Comparison for Multiple Alignment, Circos Outputs, Allmaps Genome Reconstructions), Find Ghost Genes, Identify and Analyze CNS Elements from Multiple Alignment Files and More!
PathFlow-MixMatch
Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.
PathFlowAI
A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
PolyCRACKER-Unofficial-Mirror
A robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5828-5
UnrealAI
Exploring Fun and Useful AI Projects with Friends
WSI-GTFE
Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
jlevy44's Repositories
jlevy44/PathFlowAI
A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
jlevy44/WSI-GTFE
Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
jlevy44/PathFlow-MixMatch
Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.
jlevy44/InteractionTransformer
Extract meaningful interactions from machine learning models to obtain machine-learning performance with statistical model interpretability.
jlevy44/GCN4R
GCN4R Package
jlevy44/MEML_Colon_DSP_METS
jlevy44/levylab
Levy Lab Website: https://jlevy44.github.io/levylab/
jlevy44/AutoParisX
jlevy44/HE2Tri
jlevy44/PathPretrain
Tutorial for EDIT interns on basic components of PyTorch workflow. Can be used as quick script for pretraining image classification models / extracting features with traditional image folder classes, with focus in histology.
jlevy44/SatelliteCountyMortalityPrediction
jlevy44/Submit-HPC
Growing list of submission scripts for HPC for quick hacking.
jlevy44/abstract_uploads
jlevy44/ArcticAI
See application demo: https://arcticai.demo.levylab.host.dartmouth.edu/
jlevy44/BridgeCategoryStagingModels
jlevy44/CLAM
Data Efficient & Weakly Supervised Computational Pathology on Whole Slide Images
jlevy44/Colon_Protein_DSP_Study
jlevy44/dgm
Deep Graph Mapper: Seeing Graphs through the Neural Lens
jlevy44/DH_Pressure_Injury_Prediction
jlevy44/medstudent_resident_informatics_tutorials
jlevy44/MethylCapsNet-1
jlevy44/MolecularPathologyMachineLeaningTutorial
jlevy44/omicsio
Visium data processing scripts
jlevy44/PythonFlask-JobBoard
Build a Job Board with Python & Flask
jlevy44/QBS181_Convenience2
jlevy44/QBS181_ConvenienceFunctions3
jlevy44/QBS181_ConvenientFunctions_Test
jlevy44/Top2Vec
Top2Vec learns jointly embedded topic, document and word vectors.
jlevy44/trace_app
jlevy44/virtual_conference_template
💎 🐳 A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.