medical-image-analysis

NifTK/NiftyNet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

MIC-DKFZ/medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

fahadshamshad/awesome-transformers-in-medical-imaging

A collection of resources on applications of Transformers in Medical Imaging.

MedMNIST/MedMNIST

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

suyashkumar/dicom

⚡High Performance DICOM Medical Image Parser in Go.

mlmed/torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

nyukat/breast_cancer_classifier

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

jeya-maria-jose/Medical-Transformer

Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021

JoHof/lungmask

Automated lung segmentation in CT

Ainimal/Aini_Modules

A PyTorch Computer Vision (CV) module library for building n-D networks flexibly ~

BMIRDS/deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

junyuchen245/Transformer_for_medical_image_analysis

A collection of papers about Transformer in the field of medical image analysis.

pykale/pykale

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

frankkramer-lab/MIScnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

arnab39/FewShot_GAN-Unet3D

Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning

TissueImageAnalytics/tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

HzFu/COVID19_imaging_AI_paper_list

COVID-19 imaging-based AI paper collection

MIC-DKFZ/MedNeXt

MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).

HUANGLIZI/LViT

[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"

natandrade/Tutorial-Medical-Image-Registration

Medical Image Registration

perslev/MultiPlanarUNet

Multi-Planar UNet for autonomous segmentation of 3D medical images

koriavinash1/DeepBrainSeg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

fitushar/3D-Medical-Imaging-Preprocessing-All-you-need

This Repo Will contain the Preprocessing Code for 3D Medical Imaging

josedolz/LiviaNET

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

M3DV/ACSConv

[IEEE JBHI] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!

GewelsJI/VPS

Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"

facebookresearch/CovidPrognosis

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

josedolz/HyperDenseNet

This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

mlcommons/GaNDLF

A generalizable application framework for segmentation, regression, and classification using PyTorch

anjanatiha/Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

shawnyuen/gans_paper_collection

xmindflow/Awesome-Foundation-Models-in-Medical-Imaging

A curated list of foundation models for vision and language tasks in medical imaging

mazurowski-lab/segment-anything-medical-evaluation

Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis

RichardObi/medigan

medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis

Kaushalya/medclip

A multi-modal CLIP model trained on the medical dataset ROCO