wsi

There are 76 repositories under wsi topic.

  • BMIRDS/deepslide

    Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

    Language:Python5001653140

  • histolab/histolab

    Library for Digital Pathology Image Processing

    Language:Python391615260

  • ome/bioformats

    Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

    Language:Java38930507245

  • mahmoodlab/Patch-GCN

    Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

    Language:Python13653429

  • MarvinLer/tcga_segmentation

    Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

    Language:Python12921534

  • cylab-tw/bluelight

    a browser-based DICOM viewer

    Language:JavaScript12872947

  • DIAGNijmegen/pathology-whole-slide-data

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Language:Python9653827

  • GoogleCloudPlatform/wsi-to-dicom-converter

    Conversion tool/library for converting whole slide images to DICOM

    Language:C++82232527

  • invoker-LL/WSI-finetuning

    This is the official repository for our CVPR 2023 paper 'Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supervised Pathology Whole Slide Image Classification'.

    Language:Python8041014

  • haranrk/DigiPathAI

    Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

    Language:JavaScript6761526

  • manuel-munoz-aguirre/PyHIST

    A pipeline to segment tissue from the background in histological images

    Language:Python6733013
  • mil4wsi

    aimagelab/mil4wsi

    DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs

    Language:Python545116

  • lucasrla/wsi-preprocessing

    Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

    Language:Python523214
  • raccoon

    cylab-tw/raccoon

    Raccoon is a NoSQL-based medical image archive for managing the DICOM images.

    Language:JavaScript5061012

  • cpystan/Wsi-Caption

    Official Inplementation of 《WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole Slide Images》(MICCAI 2024 Oral/ Best Paper Candidate)

    Language:Python474153

  • GoogleCloudPlatform/dicomweb-wsi-viewer

    Proof of concept whole slide imaging viewer on top of Google Cloud Healthcare DICOM API.

    Language:JavaScript3913415

  • tcxxxx/WSI-analysis

    Python scripts for automatic Whole-Slide Image preprocessing.

    Language:HTML353213
  • kat

    Zhengyushan/kat

    The code for Kernel attention transformer (KAT)

    Language:Python31156

  • asafamr/bertwsi

    Word Sense Induction with BERT MLM

    Language:Python28219

  • lucasrla/wsi-tile-cleanup

    Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning

    Language:Python27304

  • tand826/wsiprocess

    Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks

    Language:Python232433

  • Jonas1312/PFA-ScanNet

    PFA-ScanNet: Pyramidal Feature Aggregation With Synergistic Learning for Breast Cancer Metastasis Analysis (Architecture Only Pytorch Implementation).

    Language:Python22415

  • DSLituiev/slideslicer

    a toolbox for manipulation of digital pathology slides and annotations

    Language:Jupyter Notebook19304
  • CytoBrowser

    MIDA-group/CytoBrowser

    CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

    Language:JavaScript1721808

  • yasohasakii/WSI-SDK

    Toolkit for WSI preprocess, such as resample & zoom, mask, roi selection ect.

    Language:Python172212

  • andreped/vsi2tif

    Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

    Language:Jupyter Notebook16395

  • constantjxyz/GC-SPLeM

    Survival Prediction for Gastric Cancer via Multimodal Learning of Whole Slide Images and Gene Expression -- BIBM 2022

    Language:Python15110

  • smujiang/WSI2DICOM

    Simple prototype of converting whole slide image (WSI) to multiframe DICOM images

    Language:Python15225

  • computational-cell-analytics/patho-sam

    Segment Anything for Histopathology

    Language:Python14

  • ysbecca/fwat

    A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.

    Language:JavaScript11211

  • Katalip/ca-stinv-cnn

    Code for "Improving Stain Invariance of CNNs for Segmentation by Fusing Channel Attention and Domain-Adversarial Training"

    Language:Python10300

  • PingjunChen/ThyroidInteractive

    Suspicious Regions-Based Whole Slide Image Analysis

    Language:Python10222
  • ThyroidRule

    PingjunChen/ThyroidRule

    Rule-Based Thyroid Whole Slide Image Diagnosis

    Language:Python10201

  • c-arthurs/labelstrip

    GUI wrapped around anonymise label for SVS and NDPI whole slide images

    Language:Python9213

  • uzunb/deep-zoom-image-viewer

    This is a viewer app that provides using to zoom and pan tools Deep Zoom Image (dzi) or Whole Slide Image (wsi) using Electron JS and OpenSeaDragon .

    Language:JavaScript9112

  • UESTC-nnLab/ProDiv

    [CMPB 2024] ProDiv: Prototype-driven consistent pseudo-bag division for whole-slide image classification

    Language:Python8110