manuel-munoz-aguirre/PyHIST

Issues

• Segment

  #29 opened 3 years ago by swvanderlaan
  7

• is there any way to run the code without down-sample at level 0?

  #31 opened 2 years ago by coregroup6
  0

• Support for find the whole-slide image (WSI) resolution (in microns per pixel, MPP) and extracting tiles with given MPP resolution

  #20 opened 4 years ago by nodp53
  3

• Tile coordinates

  #22 opened 3 years ago by gabemarx
  3

• normalization

  #30 opened 3 years ago by swvanderlaan
  1

• PyHIST hard dependency on pixman version 0.36.0

  #27 opened 3 years ago by juanfranciscomorales
  2

• Padded tiles

  #26 opened 3 years ago by franfcunha
  2

• Out put much clear patches

  #25 opened 3 years ago by duernaT
  10

• Support for tumor segmentation

  #19 opened 4 years ago by jmayank23
  2

• CRITICAL ERROR: Please compile the segmentation algorithm before running this script.

  #24 opened 3 years ago by MohammedHAlali
  3

• Downsampling

  #23 opened 3 years ago by karray
  6

• Parameter recommendations for immunohistochemical stained WSI

  #21 opened 3 years ago by gabemarx
  6

• Test downsample factor should be updated in the tutorial

  #18 opened 4 years ago by manuel-munoz-aguirre
  1

• PyHist docker version is not working

  #17 opened 4 years ago by Sadegh-Saberian
  6

• Exhausted resources on Docker container

  #16 opened 4 years ago by manuel-munoz-aguirre
  0

• Portability for imagemagick

  #15 opened 5 years ago by manuel-munoz-aguirre
  0

• Push docker image when all is ready

  #13 opened 5 years ago by manuel-munoz-aguirre
  0

• Step takes too much memory

  #14 opened 5 years ago by manuel-munoz-aguirre
  1

• Paths broken

  #11 opened 5 years ago by manuel-munoz-aguirre
  0

• Write python check to see if segment is compiled

  #12 opened 6 years ago by manuel-munoz-aguirre
  0

• Portability

  #5 opened 6 years ago by manuel-munoz-aguirre
  1

• Provide files already unzipped

  #3 opened 6 years ago by manuel-munoz-aguirre
  1

• Cannot create output directory

  #10 opened 6 years ago by manuel-munoz-aguirre
  0

• Test pipeline on different datasets

  #7 opened 6 years ago by manuel-munoz-aguirre
  0

• Check for valid parameters

  #9 opened 6 years ago by manuel-munoz-aguirre
  0

• Script is executable but needs "bash" to run

  #4 opened 6 years ago by manuel-munoz-aguirre
  0

• Document what each argument does

  #2 opened 6 years ago by manuel-munoz-aguirre
  0

• This link is invalid

  #6 opened 6 years ago by manuel-munoz-aguirre
  0

• Add examples to README.md

  #8 opened 6 years ago by manuel-munoz-aguirre
  0

• Unsafe start of bash script

  #1 opened 6 years ago by manuel-munoz-aguirre
  0