swvanderlaan
I a medical biologist working on some genomic data while trying to learn scripting languages.
University Medical Center UtrechtUtrecht
Pinned Repositories
2016_jacc_27561768_vanderlaan_sw_cystatinc
Cystatin C and Cardiovascular Disease: A Mendelian Randomization Study.
A_Practical_Primer_in_Human_Complex_Genetics_CoCalc
A Practical Primer in Human Complex Genetics
fastQTLToolKit
fastQTL analysis of methylation and expression data
GBASToolKit
A ToolKit to perform gene-based association studies using VEGAS or MAGMA
GWASToolKit
A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
HerculesToolKit
"A collection of scripts that make heavy 'omics' work a bit lighter"
MetaGWASToolKit
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
PGSToolKit
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
QTLToolKit
A workflow based on QTLtools to run cis- and trans-QTL analyses.
slideToolKit
slideToolkit: a free toolset for analyzing wholeslide high-resolution digital histological images.
swvanderlaan's Repositories
swvanderlaan/GWASToolKit
A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
swvanderlaan/MetaGWASToolKit
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
swvanderlaan/PGSToolKit
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
swvanderlaan/QTLToolKit
A workflow based on QTLtools to run cis- and trans-QTL analyses.
swvanderlaan/slideToolKit
slideToolkit: a free toolset for analyzing wholeslide high-resolution digital histological images.
swvanderlaan/GBASToolKit
A ToolKit to perform gene-based association studies using VEGAS or MAGMA
swvanderlaan/A_Practical_Primer_in_Human_Complex_Genetics_CoCalc
A Practical Primer in Human Complex Genetics
swvanderlaan/2016_jacc_27561768_vanderlaan_sw_cystatinc
Cystatin C and Cardiovascular Disease: A Mendelian Randomization Study.
swvanderlaan/HerculesToolKit
"A collection of scripts that make heavy 'omics' work a bit lighter"
swvanderlaan/slideEMask
slideEMask: masking the areas without tissue using an image entropy filer.
swvanderlaan/2019_scirep_31882626_vanlaarhoven_c_aaa_lookup
ball
swvanderlaan/2019_vankeulen_d_osmr
swvanderlaan/2020_georgakis_vanderlaan_MCP1
Monocyte-chemoattractant protein-1 Levels in Human Atherosclerosis Associate with Plaque Vulnerability
swvanderlaan/2020_n_timmerman_n_fhx_prs_cad
Family history and polygenic risk of cardiovascular disease: independent factors associated with secondary cardiovascular manifestations in patients undergoing carotid endarterectomy
swvanderlaan/9p21_IRAK4_Plaque
swvanderlaan/apreshill
swvanderlaan/deeplearning
A repo to create a virtual environment, install `brew` for Science and `python` for deep learning.
swvanderlaan/ExpressHIST
A pipeline to segment tissue from the background in histological images
swvanderlaan/minimal
Minimal is a Jekyll theme for GitHub Pages
swvanderlaan/Monopogen
SNV calling from single cell sequencing (for macOS Sequoia and Rocky8).
swvanderlaan/osumcu21
swvanderlaan/power_median
Calculate power using median and interquartile range
swvanderlaan/publications
Additional scripts used for various publications.
swvanderlaan/roc_confusion_matrix
Doodling with ROC and Confusion Matrix
swvanderlaan/slideNormalize
slideNormalize: normalisation of histological high-resolution images.
swvanderlaan/starter-hugo-research-group
👥 Create a stunning Research Group Website with Wowchemy and Hugo
swvanderlaan/swvanderlaan
swvanderlaan/talks-and-presentations
This project contains material from talks and presentations I give.
swvanderlaan/van-der-laan-and-science-old
swvanderlaan/vanderlaanlab