ome/bioformats

Issues

• Large JP2 Read Error

  #4244 opened 3 months ago by guymac
  5

• OperettaReader: use smaller units when calculating physical Z size

  #4240 opened 2 months ago by melissalinkert
  0

• Fiji Plugin: Bio-Formats with GUI Importer

  #4246 opened 2 months ago by LPUoO
  0

• PyramidOMETiffWriter `close()` duration scales as a (number of planes)^2

  #4204 opened 2 months ago by NicoKiaru
  6

• unable to open the images saved as qpproj

  #4247 opened 2 months ago by 7Lechen322
  1

• Add method to add custom DicomJSONProvider

  #4169 opened 9 months ago by ebremer
  0

• bug: bfconvert generates bad DICOMs from SVS files

  #4161 opened 10 months ago by jcupitt
  3

• Convert several timepoints and/or channels at the same time

  #4241 opened 10 months ago by mbahin
  2

• Consider adding test that loads memo file from previous release

  #4237 opened 3 months ago by melissalinkert
  1

• Empty image.name returned by `showinf` for some Zeiss .czi file

  #4239 opened 3 months ago by technics3
  1

• Consider more thorough comparison of image data in automated tests

  #4238 opened 3 months ago by melissalinkert
  0

• Bug: MicroManager 2.0.0 Division by 0

  #4236 opened 4 months ago by jburel
  1

• Dead store to local variable

  #4235 opened 4 months ago by scuniff
  0

• NULL being returned for a Boolean object

  #4232 opened 4 months ago by scuniff
  0

• ScanR: exposure times not always populated

  #4231 opened 4 months ago by melissalinkert
  0

• IMOD: store one Shape per ROI

  #4230 opened 4 months ago by melissalinkert
  0

• Leica TCS: incorrect used files list

  #4229 opened 4 months ago by melissalinkert
  0

• SimplePCI TIFF: evaluate metadata mappings

  #4228 opened 4 months ago by melissalinkert
  0

• Nikon TIFF channel metadata

  #4227 opened 4 months ago by melissalinkert
  0

• Cast to float may be needed

  #4210 opened 4 months ago by scuniff
  0

• Metamorph ND time-lapse no longer recognised

  #4226 opened 4 months ago by dominikl
  2

• LIF Reader: index out of bounds

  #4199 opened 4 months ago by jburel
  2

• Cast to double may be needed

  #4225 opened 4 months ago by scuniff
  1

• FluoviewReader: Timepoints split over multiple files not recognized as single dataset

  #4223 opened 4 months ago by dgault
  1

• FIJI plugin: Running Bio-Formats Exporter as a macro appends to existing file by default

  #4221 opened 4 months ago by dgault
  1

• loci.formats.FormatException while converting series to tiff format

  #4216 opened 5 months ago by de9821
  3

• Float/double data not supported by `DicomWriter`

  #4218 opened 5 months ago by melissalinkert
  1

• && needed instead of &

  #4209 opened 5 months ago by scuniff
  0

• May need to replace single | with double ||

  #4212 opened 5 months ago by scuniff
  0

• Switch clauses have same code

  #4213 opened 5 months ago by scuniff
  1

• break statement always gets executed

  #4211 opened 5 months ago by scuniff
  0

• Strings are being compared with == and !=

  #4184 opened 6 months ago by scuniff
  1

• CZI: fluorescent channels not displaying

  #4206 opened 6 months ago by dgault
  1

• Bug(?): IJ exported OME-TIFFs lack original metadata

  #4201 opened 6 months ago by joshmoore
  0

• FEATURE REQUEST: BioFormats support for CZI Multi Scene images

  #4194 opened 7 months ago by MichaelDausmann
  3

• SVS/MinimalTiffReader: FormatException: No IFDs found

  #4192 opened 7 months ago by dominikl
  1

• CZI Incorrect Pixel Physical Size (For pyramidal image series)

  #4191 opened 7 months ago by ian-coccimiglio
  0

• Loading of indica tiff files

  #4189 opened 7 months ago by rharkes
  2

• bfconvert: Using channel option does not remove additional channel elements from OME-XML

  #4149 opened 8 months ago by dgault
  1

• BioFormats DICOM WSI reader problem with nested Pixel Data in private data element and/or offset tables

  #4165 opened 8 months ago by dclunie
  1

• bfconvert: issue after changing tile size in ome.tiff

  #4176 opened 9 months ago by alexeykurbako
  1

• Repeated conditional tests

  #4143 opened 9 months ago by scuniff
  2

• showinf `OutOfMemoryError` with large JPG file

  #4175 opened 9 months ago by glyg
  3

• DicomJSONProvider JSON format

  #4174 opened 9 months ago by ebremer
  0

• libturbojpeg.dylib does not pass the macOS notarization check

  #4170 opened 9 months ago by conradkun
  0

• SVS: Incorrect image colour

  #4166 opened 9 months ago by dgault
  1

• Repeated conditional test II

  #4160 opened 10 months ago by scuniff
  1

• CZI single channel image is read as RGB

  #4153 opened 10 months ago by will-moore
  2

• CZI: Auto-stitch scaling

  #4150 opened a year ago by dgault
  1

• Argument #1 to org.joda.time.DateTime is declared as a long but an int is being passed in MetamorphReader.decodeTime(int millis).

  #4142 opened a year ago by scuniff
  1