Pinned Repositories
omero-figure
An OMERO.web app for creating Figures from images in OMERO
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
napari-idr
Napari plugin for opening images from idr.openmicroscopy.org
omero-web-apps-examples
Example Setup for Web Apps
omero_scripts
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
parade-crossfilter
Prototype OMERO.parade implementation using crossfilter.js
will-moore's Repositories
will-moore/ome-ngff-validator
Web page for validating OME-NGFF files
will-moore/ome-zarr.js
Some JavaScript utils for simple rendering of OME-Zarr images
will-moore/omero-skye
SvelteKit based app for browsing data from OMERO
will-moore/python-scripts
Just a bunch of python code samples I have created for testing or responding to forum.image.sc.
will-moore/scripts
Extracted OmeroPy/scripts directory for local modifications.
will-moore/zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
will-moore/biofile-finder
An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
will-moore/deployment
Deployment infrastructure for the Image Data Resource
will-moore/figure
An OMERO.web app for creating Figures from images in OMERO
will-moore/idr-notebooks
Jupyter Notebooks for the Image Data Resource
will-moore/idr-utils
Utility scripts for managing IDR submissions
will-moore/jax-ngff-challenge-2024
will-moore/napari-ome-zarr
A reader for zarr backed OME-NGFF images
will-moore/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
will-moore/ome-contributing
will-moore/ome-ngff-samples
A catalog of all public OME-NGFF representative samples derived from IDR data
will-moore/ome-zarr-py
Experimental implementation of images in Zarr files.
will-moore/ome2024-ngff-challenge
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
will-moore/omero-cli-render
OMERO command-line tool for rendering
will-moore/omero-cli-zarr
will-moore/omero-gallery
will-moore/omero-guide-figure
will-moore/omero-iviewer
An OMERO.web app allowing to view images
will-moore/omero-mapr
An OMERO.web app allowing to browse the data through attributes linked to the image
will-moore/omero-parade
OMERO.web plugin for displaying Dataset thumbnails or Plates in webclient center panel
will-moore/omero-web
Django-based OMERO.web client
will-moore/omero-web-zarr
Implementation of OME-Zarr API with an omero-web app
will-moore/omero_search_engine_client
Client for the Omero Search Engine
will-moore/prod-playbooks
Playbooks used by the OME team for deploying production services including OMERO
will-moore/www.openmicroscopy.org