Open Microscopy Environment

apacheds-docker

Dockerfile to build an ApacheDS container providing an LDAP and optionally a Kerberos service.

bio-formats-examples

Examples of usage of the Bio-Formats API

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

omero-deployment-examples

Examples playbooks for installing OMERO with Ansible and Docker

omero-figure

An OMERO.web app for creating Figures from images in OMERO

omero-insight

Gradle project containing insight java client for OMERO

openmicroscopy

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

ome/ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ome/ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ome/ansible-role-prometheus-postgres

Prometheus Postgres exporter

ome/ome-model

OME model (specification, code generator, implementation)

ome/bio-formats-examples

Examples of usage of the Bio-Formats API

ome/ansible-role-nginx-proxy

Install Nginx for use as a front-end proxy.

ome/ansible-role-postgresql

Install upstream PostgreSQL server. Optionally creates users and databases.

ome/bio-formats-documentation

Bio-Formats documentation

ome/ngff-spec

(EXPERIMENTAL) Investigation of splitting NGFF specifications out of ome/ngff

ome/www.openmicroscopy.org

OME main website

ome/ansible-role-postgresql-backup

Backup PostgreSQL database servers

ome/ansible-role-postgresql-client

Install PostgreSQL clients from the upstream distribution

ome/ansible-role-openstack-volume-storage

Create and attach a volume to an Openstack instance

ome/ome-common-java

Java library providing common functionality for all OME Java components

ome/ome-metakit

Library for reading Metakit database files

ome/ansible-role-anonymous-ftp

Anonymous FTP uploads with Docker

ome/ansible-role-basedeps

Base dependencies for most servers.

ome/ansible-role-deploy-archive

Deploys an archive

ome/bio-formats-build

Bio-Formats top-level build for all components

ome/omero_search_engine

App which is used to search metadata (key-value pairs)

ome/upptime

📈 Uptime monitor and status page for OME, powered by @upptime

ome/ansible-role-analysis-tools

Useful tools for running high-throughput analyses.

ome/ansible-role-cli-utils

Useful command-line utilities for administering a server.

ome/ansible-role-ice

Ansible role for installing ZeroC's Ice Framework

ome/ansible-role-java

Install Java JREs and optionally JDKs.

ome/ansible-role-nginx

Install Nginx

ome/ansible-role-redis

Install Redis.

ome/ome-poi

OME fork of Apache Jakarta POI

ome/ome-resources-monitor

ome/omero-ms-image-region

OMERO image region Vert.x asynchronous microservice server