ome/napari-ome-zarr

Issues

• viewer.add_labels crashes napari 0.5.3 on Mac M1

  #119 opened 4 months ago by mathieuboudreau
  1

• no registered plugin named 'napari-ome-zarr'

  #86 opened 4 months ago by will-moore
  4

• Napari colormaps within OME-Zarr Metadata

  #29 opened 3 years ago by camFoltz
  4

• Multiscale ome zarr support

  #118 opened 5 months ago by derekthirstrup
  1

• Compatibility with latest ome-zarr-py

  #111 opened 5 months ago by ziw-liu
  2

• Tests fail with ome-zarr 0.8.3

  #108 opened 5 months ago by dstansby
  4

• Support for N5 drag and drop

  #95 opened a year ago by martlj
  2

• Right click on any layer fails

  #34 opened 3 years ago by constantinpape
  4

• Not clear if plugin reads whole dataset into memory?

  #105 opened 5 months ago by dstansby
  1

• Duplicated layers loaded with s3fs & fsspec 2023.12.2

  #102 opened 5 months ago by jluethi
  2

• Unable to load webknossos hosted zarr datasets

  #66 opened 5 months ago by jstriebel
  16

• right click on layer menu is broken

  #90 opened 2 years ago by d-v-b
  1

• Labels layers don't load with napari 0.5.0 (dev)

  #109 opened 5 months ago by psobolewskiPhD
  10

• use the qapp fixture and `qapp.processEvents()`

  #113 opened 5 months ago by joshmoore
  0

• Can't open Zarr files with labels

  #104 opened 6 months ago by FIrgolitsch
  2

• Can't open zarr contains which contains any other than the expected files

  #106 opened 8 months ago by tibuch
  1

• issues with loading labels data with this plugin

  #99 opened a year ago by jni
  10

• Error at reading demo file

  #103 opened 10 months ago by aloboa
  4

• Writing Labels

  #101 opened a year ago by FIrgolitsch
  0

• Converting image to labels

  #100 opened a year ago by FIrgolitsch
  1

• Open data from existing group?

  #98 opened a year ago by rabernat
  4

• Support bioformats2raw.layout

  #71 opened 2 years ago by will-moore
  8

• Error loading HCS plates from S3

  #94 opened a year ago by elyall
  2

• Plugin opens image, but does not display data (everything is 0); SOLVED: must use "/" dimension separator.

  #91 opened a year ago by GFleishman
  3

• Problems opening a 384 well-plate

  #84 opened 2 years ago by tibuch
  2

• Handle AnnData regions tables

  #85 opened 2 years ago by will-moore
  16

• Layer name only contains first character from a multi-scale 2D image

  #80 opened 2 years ago by andy-sweet
  0

• omero metadata info used in napari

  #79 opened 2 years ago by giovp
  1

• Failed to open a zarr file

  #20 opened 2 years ago by bpavie
  1

• Support coordinateTransformations on multiscales v0.4

  #73 opened 2 years ago by will-moore
  0

• Cannot open OME-Zarr created with bioformats2raw

  #21 opened 2 years ago by dpshepherd
  17

• Write ome-zarr images (feature request)

  #67 opened 2 years ago by haesleinhuepf
  1

• Layer names

  #36 opened 2 years ago by constantinpape
  4

• Reading from private S3 bucket

  #64 opened 2 years ago by jkh1
  1

• Fail to read multi-image.ome.zarr from local filesystem

  #63 opened 2 years ago by jkh1
  3

• napari reader preferences are not respected

  #41 opened 2 years ago by maweigert
  3

• Best way to save/view RGB images

  #57 opened 2 years ago by maweigert
  1

• opening zarr file just the lowest pyramid level is loaded

  #45 opened 2 years ago by mfranzon
  12

• UI controls for browsing Plate Fields

  #61 opened 2 years ago by will-moore
  0

• RFE: relax filename_patterns to read child elements

  #51 opened 2 years ago by sbesson
  4

• Demo zarr does not work

  #56 opened 2 years ago by maweigert
  7

• open ngff file with lower resolution pyramid

  #49 opened 3 years ago by satra
  4

• Move to new plugin architecture

  #27 opened 3 years ago by joshmoore
  1

• Is there a equivalent of `channel_axis` property?

  #40 opened 3 years ago by ajitjohnson
  2

• CLI: napari <PATH> fails for some ome.zarr files

  #37 opened 3 years ago by constantinpape
  2

• High-content screening ngff metadata schema empty image

  #39 opened 3 years ago by mfranzon
  4

• Labels should be opened as label layer

  #35 opened 3 years ago by constantinpape
  4

• Can't open volumetric data via S3 (works locally!)

  #38 opened 3 years ago by constantinpape
  3

• Are "labels" supported by the plugin?

  #33 opened 3 years ago by constantinpape
  5

• installation page usage error, ValueError: No plugin found capable of reading 'https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001240.zarr/'.

  #23 opened 3 years ago by mezwick
  24