constantinpape
Group leader at Uni Goettingen. I work on deep learning and computer vision solutions for large-scale bio-image analysis.
University GoettingenGoettingen, Germany
Pinned Repositories
micro-sam
Segment Anything for Microscopy
affogato
Affinity based segmentation algorithms and tools
cluster_tools
Distributed segmentation for bio-image-analysis
elf
Utils and convenience functions for large-scale bio-image analysis.
heimdall
Python based viewer for large mulit-dimensional datasets.
pybdv
python tools for BigDataViewer
torch-em
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
training-deep-learning-models-for-vison
z5
Lightweight C++ and Python interface for datasets in zarr and N5 format
nifty
A nifty library for graph based image segmentation.
constantinpape's Repositories
constantinpape/z5
Lightweight C++ and Python interface for datasets in zarr and N5 format
constantinpape/torch-em
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
constantinpape/elf
Utils and convenience functions for large-scale bio-image analysis.
constantinpape/cluster_tools
Distributed segmentation for bio-image-analysis
constantinpape/pybdv
python tools for BigDataViewer
constantinpape/dalle-mini-poster
Create posters from dalle-mini / craiyon screenshots
constantinpape/3d-cnn
constantinpape/CellSeg3D
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
constantinpape/deep-micro-val
Evaluating segmentation methods for common cell segmentation problems
constantinpape/nifty
nifty cPP and Python
constantinpape/ome-zarr-py
Experimental implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
constantinpape/03_learned_representations
An execise for using features extracted from a vision transformer for downstream tasks
constantinpape/bioimage-io-resources
Model repo for bioimage.io
constantinpape/computational-cell-analytics-home
A truly simple website template for academics
constantinpape/docs
Documentation for napari (other than API docs)
constantinpape/LIVECell
constantinpape/liveCell-1
constantinpape/micro-sam
Segment Anything for Microscopy
constantinpape/micro_sam-feedstock
A conda-smithy repository for micro_sam.
constantinpape/mobie-python-examples
constantinpape/mobie_utils-feedstock
A conda-smithy repository for mobie_utils.
constantinpape/napari
napari: a Qt- and VisPy-based ndarray visualization tool
constantinpape/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
constantinpape/pybdv-feedstock
A conda-smithy repository for pybdv.
constantinpape/python-elf-feedstock
A conda-smithy repository for python-elf.
constantinpape/stable-diffusion
constantinpape/stardist
StarDist - Object Detection with Star-convex Shapes
constantinpape/SuperHuman
Superhuman accuracy on the SNEMI3D connectomics challenge
constantinpape/synaptic-reconstruction
Reconstruction of synaptic structures in electron microscopy
constantinpape/torch_em-feedstock
A conda-smithy repository for torch_em.