constantinpape/torch-em

Issues

• Set non blocking to True for device allocation in lazy loading

  #356 opened 2 months ago by anwai98
  0

• Reformulate instance label transforms

  #355 opened 2 months ago by anwai98
  1

• Move Lizard dataset download to supported kaggle API

  #343 opened 3 months ago by anwai98
  0

• Issue with PlantSeg (Nuclei) labels

  #345 opened 3 months ago by anwai98
  0

• Check HPA dataset processing

  #350 opened 2 months ago by anwai98
  3

• Extend dataloaders notebook to rgb images

  #347 opened 3 months ago by anwai98
  0

• Provide simpler installation for ViM-UNet

  #237 opened 8 months ago by constantinpape
  0

• Issues with PlantSeg dataset

  #341 opened 3 months ago by anwai98
  1

• questions about image shape

  #208 opened 3 months ago by JIBSN
  2

• MitoEM rat volume download doesn't work

  #201 opened 3 months ago by anwai98
  2

• Add random colors wrapper for plotting instance segmentation

  #233 opened 3 months ago by anwai98
  1

• Support for optional internal padding for SegmentationDataset

  #298 opened 3 months ago by anwai98
  1

• segmentation dataset: padding and sampler negate each other

  #333 opened 4 months ago by lufre1
  0

• Resize feature in the datasets

  #311 opened 4 months ago by anwai98
  1

• List of further datasets

  #242 opened 8 months ago by constantinpape
  3

• add new label transform

  #320 opened 5 months ago by lufre1
  0

• environment_cpu.yaml does not exist (perhaps a typo or a missing channel

  #299 opened 6 months ago by cdalinghaus
  3

• Error messages for ROIs

  #274 opened 7 months ago by lufre1
  0

• Make ASEM download more efficient

  #240 opened 8 months ago by constantinpape
  0

• Refactor NeurIPS CellSeg dataset

  #198 opened 8 months ago by anwai98
  1

• Save running metric for each checkpoint

  #218 opened 8 months ago by anwai98
  1

• Request for DistributedDataParallel

  #229 opened 9 months ago by sladenheim
  1

• Error in _get_kwarg function when handling lists as input

  #227 opened 9 months ago by emmateki
  0

• request for more examples

  #225 opened 9 months ago by PG-Gu
  1

• we should not filter students predictions

  #204 opened a year ago by jvkubm
  3

• Update google drive downloads

  #200 opened a year ago by anwai98
  2

• Enable UNETR for dynamic input shape

  #183 opened a year ago by constantinpape
  0

• Enable classification logger for n-channels != 1, 3

  #167 opened a year ago by constantinpape
  0

• Platynereis cilia val split

  #162 opened a year ago by anwai98
  1

• Can't Install torch'em

  #152 opened a year ago by MahdiKoochali
  1

• UNETR with SAM initialization is not working yet

  #147 opened a year ago by constantinpape
  1

• Implement Sponge Dataset

  #141 opened a year ago by constantinpape
  0

• Implement DeePict Dataset

  #140 opened a year ago by constantinpape
  1

• Implement resize augmentations

  #72 opened 2 years ago by constantinpape
  0

• Add general functionality for resampling datasets

  #70 opened 2 years ago by constantinpape
  1

• Follow ups: SPOCO

  #103 opened 2 years ago by constantinpape
  0

• ResNet3d updates

  #102 opened 2 years ago by constantinpape
  0

• Multiple class output

  #95 opened 2 years ago by Czaki
  7

• Add support for multichannel compresed tif files

  #92 opened 2 years ago by Czaki
  5

• Sample code from Readme ends with error

  #91 opened 2 years ago by Czaki
  1

• 2D-UNet training notebook doesn't work for Colab

  #69 opened 2 years ago by qin-yu
  3

• Implement halo enlargment for transforms

  #76 opened 2 years ago by constantinpape
  0

• Rethink validation metrics, checkpointing, lr scheduling, implement metric smoothing

  #66 opened 2 years ago by constantinpape
  0

• Loading checkpoints with WandbLogger seems broken

  #25 opened 3 years ago by FynnBe
  1

• Issue when running deform:compress augmentation

  #16 opened 3 years ago by constantinpape
  0

• Meta issue: notes from modelzoo sprint

  #14 opened 3 years ago by constantinpape
  1

• Update model zoo exporter to support deep imagej

  #13 opened 3 years ago by constantinpape
  3

• Pin pytorch versions in modelzoo export

  #11 opened 3 years ago by constantinpape
  0

• Make sure to use correct initialization of random seed when using np.random in dataloaders

  #3 opened 4 years ago by constantinpape
  0

• Readme example does not work

  #2 opened 4 years ago by constantinpape
  1