d-v-b
I like to design and implement software for large imaging workflows.
Independent software engineerWürzburg, Germany
Pinned Repositories
examples
Data wrangling demonstrations and how-tos
fish
Tools for working with zebrafish data generated by the Ahrens lab at Janelia Research Campus
matchviz
visualizing matching points
pydantic-bigstitcher
Pydantic models for BigStitcher metadata.
zarr-jpeg
Lossy JPEG compression for 8 bit arrays stored with zarr
openorganelle
A portal for viewing FIB-SEM datasets
xarray-multiscale
scalable multiscale image pyramids in python
pydantic-zarr
Pydantic models for Zarr
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
d-v-b's Repositories
d-v-b/pydantic-bigstitcher
Pydantic models for BigStitcher metadata.
d-v-b/matchviz
visualizing matching points
d-v-b/zarr-workbench
trying out different things with zarr
d-v-b/caddy-cors-server
Static file server with CORS via Caddy
d-v-b/zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
d-v-b/dotfiles
my dotfiles
d-v-b/zeps
Zarr Enhancement Proposals
d-v-b/affmap
affine transformations with named axes
d-v-b/aind-exaSPIM-pipeline-utils
ExaSPIM pipeline components primarily to be installed in Code Ocean capsules
d-v-b/aind-zarr-presentation
materials involved in a presentation about zarr-python 3.0
d-v-b/BigStitcher-Spark
Running compute-intense parts of BigStitcher distributed
d-v-b/cellmap_practice
d-v-b/d-v-b
d-v-b
d-v-b/d-v-b.github.io
A truly remarkable website
d-v-b/dacapo
A framework for easy application of established machine learning techniques on large, multi-dimensional images.
d-v-b/fibsem-tools
Tools for handling FIB-SEM data and annotations
d-v-b/filesystem_spec
A specification that python filesystems should adhere to.
d-v-b/funlib.persistence
Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
d-v-b/gcsfs
Pythonic file-system interface for Google Cloud Storage
d-v-b/multiview-stitcher
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
d-v-b/n5
Not HDF5
d-v-b/neuroglancer
WebGL-based viewer for volumetric data
d-v-b/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
d-v-b/numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
d-v-b/ome-zarr-models-py
Prototype for a common minimal-dependencies Python implementation of the NGFF data model
d-v-b/parquet-format
Apache Parquet Format
d-v-b/tutorial
d-v-b/xarray
N-D labeled arrays and datasets in Python
d-v-b/zarr-3-xarray-post
materials for a blog post about zarr-python 3.0 and xarray
d-v-b/zarr-specs
Zarr core protocol for storage and retrieval of N-dimensional typed arrays