d-v-b

aoc

advent of code

examples

Data wrangling demonstrations and how-tos

fish

Tools for working with zebrafish data generated by the Ahrens lab at Janelia Research Campus

presentations

Presentation materials

zarr-jpeg

Lossy JPEG compression for 8 bit arrays stored with zarr

openorganelle

A portal for viewing FIB-SEM datasets

pydantic-zarr

Pydantic models for Zarr

xarray-multiscale

scalable multiscale image pyramids in python

zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.

d-v-b/zarr-jpeg

Lossy JPEG compression for 8 bit arrays stored with zarr

d-v-b/presentations

Presentation materials

d-v-b/aoc

advent of code

d-v-b/pydantic-bigstitcher

Pydantic models for BigStitcher metadata.

d-v-b/zarr-benchmarks

Benchmarks for zarr-python

d-v-b/zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.

d-v-b/dotfiles

my dotfiles

d-v-b/cellmap_practice

d-v-b/d-v-b

d-v-b

d-v-b/d-v-b.github.io

A truly remarkable website

d-v-b/dacapo

A framework for easy application of established machine learning techniques on large, multi-dimensional images.

d-v-b/dask

Parallel computing with task scheduling

d-v-b/dask-jobqueue

Deploy Dask on job schedulers like PBS, SLURM, and SGE

d-v-b/fastapi_blog

fastapi tutorial

d-v-b/fibsem-metadata

Human-readable descriptions of our datasets

d-v-b/fibsem-tools

Tools for handling FIB-SEM data and annotations

d-v-b/filesystem_spec

A specification that python filesystems should adhere to.

d-v-b/funlib.persistence

Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

d-v-b/intake

Intake is a lightweight package for finding, investigating, loading and disseminating data.

d-v-b/matchviz

visualizing matching points

d-v-b/n5

Not HDF5

d-v-b/neuroglancer

WebGL-based viewer for volumetric data

d-v-b/ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

d-v-b/numcodecs

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

d-v-b/status-board

generate a project summary in SVG from JSON

d-v-b/tutorial

d-v-b/unityvr

Tools for analyzing data collected with a custom unity-based VR for insects.

d-v-b/xpublish

Publish Xarray Datasets via a REST API.

d-v-b/zarr-specs

Zarr core protocol for storage and retrieval of N-dimensional typed arrays

d-v-b/zeps

Zarr Enhancement Proposals