satra
My research interests span computer science and neuroimaging, in the areas of applied machine learning, software engineering, and clinical applications.
MITCambridge, MA, USA
Pinned Repositories
nipype
Workflows and interfaces for neuroimaging packages
nobrainer
Neural networks to semantically segment brains in structural magnetic resonance images
ohbm2010
posters for ohbm
prov
A suites of Python modules for encoding, tracking, and storing provenance assertions
pydra
a new engine
schema-ui
rendering of https://github.com/sanuann/schema-standardization
mapalign
Diffusion map based embedding and alignment
satra's Repositories
satra/satra.github.com
the little corner
satra/nobrainer
Neural networks to semantically segment brains in structural magnetic resonance images
satra/pydra
a new engine
satra/awesome-public-datasets
A topic-centric list of HQ open datasets.
satra/BEP028_BIDSprov
Organizing and coordinating BIDS extension proposal 28 : BIDS Provenance
satra/BIDS
Brain Imaging Data Structure
satra/bridge2ai-jupyter
Docker Image for JupyterHub with restricted download and tensorflow/pytorch
satra/covid19
A survey protocol for covid19
satra/dandi-cli
DANDI command line client to facilitate common operations
satra/dandi-io
Remote access to dandisets
satra/dandischema
Schemata for DANDI archive project
satra/datalad-paper-joss
Repository for JOSS paper on DataLad
satra/dislocker
FUSE driver to read/write Windows' BitLocker-ed volumes under Linux / Mac OSX
satra/embedchain
Memory for AI agents
satra/fsspec-reference-maker
Functions to make reference descriptions for ReferenceFileSystem
satra/group
satra/jupyterhub
Multi-user server for Jupyter notebooks
satra/linkml-aind-model
A LinkML model translated from the Allen Institute's AIND model
satra/murfi2
The realtime fMRI software platform - an MIT-MGH collaboration
satra/ngustafson2023.github.io
Trained TensorFlow models for 3D image processing
satra/nh2021-jupyterhub
satra/nimh-minimal
satra/nwb-explorer
NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
satra/oauthenticator
OAuth + JupyterHub Authenticator = OAuthenticator
satra/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
satra/openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
satra/PandasGPTAgent
Chat with your data utilizing powerful AI capabilities (OpenAI & LangChain)
satra/pydra-ml
satra/redirector
satra/z5
Lighweight C++ and Python interface for datasets in zarr and N5 format