haesleinhuepf
Computer Vision & Language Models, [BioImage] Data Science, GPUs @ScaDS / Uni Leipzig, @NFDI4BIOIMAGE, @GloBIAS-BioimageAnalysts, @NEUBIAS
Data Science Center ScaDS.AI, Uni LeipzigLeipzig, Germany
Pinned Repositories
pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
apoc
Accelerated Pixel and Object Classifiers (APOC)
bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.
git-bob
git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.
human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
generative-ai-notebooks
A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents
haesleinhuepf's Repositories
haesleinhuepf/stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
haesleinhuepf/BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
haesleinhuepf/bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
haesleinhuepf/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
haesleinhuepf/devbio-napari
haesleinhuepf/git-bob
git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.
haesleinhuepf/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
haesleinhuepf/human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
haesleinhuepf/napari-assistant
haesleinhuepf/napari-simpleitk-image-processing
Process images using SimpleITK in napari
haesleinhuepf/napari-tools-menu
haesleinhuepf/bluesky-bob
A bot that uses LLMs to respond on bluesky
haesleinhuepf/docx2markdown
A Python utility to convert simple docx files to markdown and back
haesleinhuepf/git-bob-bioimage-analysis-example
haesleinhuepf/vlm-pictionary
Play pictionary with Vision Language Models!
haesleinhuepf/haesleinhuepf.github.io
haesleinhuepf/zenodo-bluesky-bob
Checks Zenodo Communities for updates and posts about them on Bluesky
haesleinhuepf/devbio-napari-feedstock
A conda-smithy repository for devbio-napari.
haesleinhuepf/famous_computer_science_quotes
In this Jupyter Book we collect famous quotes from computer scientists. The repository serves training purposes at the DataWeek Leipzig 2024: We learn how to fork, send pull-requests and merge contents on github.com.
haesleinhuepf/faster-whisper-stt
Simple and basic python function for transcribing audio in realtime based on faster-whisper
haesleinhuepf/git-bob-advent-of-code
Solving the Advent of Code with LLMs
haesleinhuepf/git-bob-manuscript
haesleinhuepf/git-bob-peer-review-example
haesleinhuepf/git-bob-playground
haesleinhuepf/i2k2024-ai-code-generation
Workshop repository for the I2K (virtual) workshop on Bio Image Analysis Code Generation
haesleinhuepf/markitdown
Python tool for converting files and office documents to Markdown.
haesleinhuepf/smolagents
🤗 smolagents: a barebones library for agents. Agents write python code to call tools and orchestrate other agents.
haesleinhuepf/test-git-ubl
haesleinhuepf/ul_rdm_git_demo
haesleinhuepf/ymia_python_event_series_material
This repository offer access to teaching material and useful resources for the YMIA - Python-Based Event Series.