haesleinhuepf
#GenerativeAI, LLMs, (Image) Data Analysis, GPUs @ScaDS / Uni Leipzig, @NFDI4BIOIMAGE, @GloBIAS-BioimageAnalysts, @NEUBIAS
Data Science Center ScaDS.AI, Uni LeipzigLeipzig, Germany
Pinned Repositories
pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
apoc
Accelerated Pixel and Object Classifiers (APOC)
bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.
devbio-napari
git-bob
git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.
human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
haesleinhuepf's Repositories
haesleinhuepf/stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
haesleinhuepf/BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
haesleinhuepf/bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
haesleinhuepf/blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.
haesleinhuepf/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
haesleinhuepf/devbio-napari
haesleinhuepf/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
haesleinhuepf/napari-assistant
haesleinhuepf/human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
haesleinhuepf/napari-simpleitk-image-processing
Process images using SimpleITK in napari
haesleinhuepf/git-bob
git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.
haesleinhuepf/napari-workflows
haesleinhuepf/napari-tools-menu
haesleinhuepf/napari-xgboost
A napari plugin for pixel classification using XGBoost.
haesleinhuepf/git-bob-bioimage-analysis-example
haesleinhuepf/ipy-llm-kernel
A Jupyter kernel for communicating with large language models
haesleinhuepf/haesleinhuepf.github.io
haesleinhuepf/napari-mouse-controls
Control zoom, slicing and contrast windowing with mouse and touch screen
haesleinhuepf/devbio-napari-feedstock
A conda-smithy repository for devbio-napari.
haesleinhuepf/faster-whisper-stt
Simple and basic python function for transcribing audio in realtime based on faster-whisper
haesleinhuepf/git-bob-manuscript
haesleinhuepf/git-bob-peer-review-example
haesleinhuepf/git-bob-playground
haesleinhuepf/git-demo-dataweek2024
This repository serves as playground for the DataWeek Leipzig 2024
haesleinhuepf/i2k2024-ai-code-generation
Workshop repository for the I2K (virtual) workshop on Bio Image Analysis Code Generation
haesleinhuepf/napari-clusters-plotter-feedstock
A conda-smithy repository for napari-clusters-plotter.
haesleinhuepf/robbot
haesleinhuepf/skills-review-pull-requests
My clone repository
haesleinhuepf/used-versions
haesleinhuepf/ymia_python_event_series_material
This repository offer access to teaching material and useful resources for the YMIA - Python-Based Event Series.