haesleinhuepf
Image Data Scientist, Lecturer, Training Coordinator @ScaDS AI / Leipzig University, Germany
Data Science Center ScaDS.AI, Uni LeipzigLeipzig, Germany
Pinned Repositories
pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
clij2
GPU-accelerated image processing for everyone
apoc
Accelerated Pixel and Object Classifiers (APOC)
bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.
devbio-napari
napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
haesleinhuepf's Repositories
haesleinhuepf/BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
haesleinhuepf/stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
haesleinhuepf/bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
haesleinhuepf/blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.
haesleinhuepf/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
haesleinhuepf/devbio-napari
haesleinhuepf/napari-process-points-and-surfaces
Process and analyze surfaces using vedo in napari.
haesleinhuepf/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
haesleinhuepf/story-writer
An AI-based story writer and Python library which uses OpenAI's chatGPT and Dall-E to generate PDFs with a story and a picture from a prompt and writes them into a PDF.
haesleinhuepf/human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
haesleinhuepf/napari-folder-browser
haesleinhuepf/prompting-pptx
Generate PowerPoint files using chatGPT and Dall-E
haesleinhuepf/simple-rag
An implementation of retrieval-augmented-generation (RAG) using numpy and OpenAI embeddings, with no clutter, for academic purposes
haesleinhuepf/spheri
A library for feature extraction from 3D label images
haesleinhuepf/haesleinhuepf.github.io
haesleinhuepf/SAMJ-IJ
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
haesleinhuepf/awesome-mlss
List of summer schools in machine learning + related fields across the globe
haesleinhuepf/basaran
Basaran is an open-source alternative to the OpenAI text completion API. It provides a compatible streaming API for your Hugging Face Transformers-based text generation models.
haesleinhuepf/bia-explorer
Python package for exploring BIA data
haesleinhuepf/BIDS-lecture-2024
Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024
haesleinhuepf/blog
haesleinhuepf/core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
haesleinhuepf/famous_computer_science_quotes
In this Jupyter Book we collect famous quotes from computer scientists. The repository serves training purposes at the DataWeek Leipzig 2024: We learn how to fork, send pull-requests and merge contents on github.com.
haesleinhuepf/geo-chat-tutorial
Using ChatGPT Function Caling to execute geospatial functions
haesleinhuepf/git-demo-dataweek2024
This repository serves as playground for the DataWeek Leipzig 2024
haesleinhuepf/intel-extension-for-transformers
⚡ Build your chatbot within minutes on your favorite device; offer SOTA compression techniques for LLMs; run LLMs efficiently on Intel Platforms⚡
haesleinhuepf/jupyter-book
Create beautiful, publication-quality books and documents from computational content.
haesleinhuepf/napari-nyxus
haesleinhuepf/napari-stable-diffusion
A stable diffusion demo for napari
haesleinhuepf/UC2-GIT
Respository for Open-Science modular microscope system.