haesleinhuepf
#GenerativeAI, LLMs, (Image) Data Analysis, GPUs @ScaDS / Uni Leipzig, @NFDI4BIOIMAGE, @GloBIAS-BioimageAnalysts, @NEUBIAS
Data Science Center ScaDS.AI, Uni LeipzigLeipzig, Germany
Pinned Repositories
pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
apoc
Accelerated Pixel and Object Classifiers (APOC)
bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.
git-bob
git-bob uses AI to solve Github-issues and review pull-requests. It runs inside the Github CI, no need to install anything on your computer.
human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
haesleinhuepf's Repositories
haesleinhuepf/natari
Napari gaming
haesleinhuepf/napari-workflow-inspector
Inspect relationships between napari-plugins in active workflows.
haesleinhuepf/napari-curtain
haesleinhuepf/napari-manual-split-and-merge-labels
haesleinhuepf/napari-generalized-histogram-thresholding
haesleinhuepf/napari-mahotas-image-processing
haesleinhuepf/napari-pyfast-image-processing
Use pyFAST's CPU/GPU-accelerated image processing from within napari.
haesleinhuepf/napari-webcam
haesleinhuepf/pyqode.core
Core framework of pyQode
haesleinhuepf/pyqode.python
Adds Python support to pyQode
haesleinhuepf/awesome-bioimage-analysis-challenges
A list of awesome bioimage analysis challenges
haesleinhuepf/blik
Blik is a python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
haesleinhuepf/clijx-dev
development of new CLIJx / CLIJ2 functionalities and plugins
haesleinhuepf/cupy
NumPy & SciPy for GPU
haesleinhuepf/dexp
Dataset EXploration & Processing
haesleinhuepf/library
haesleinhuepf/list-of-update-sites
The update sites ImageJ knows about automatically
haesleinhuepf/napari-labeling
haesleinhuepf/napari-metroid
This napari plugin creates several regions of interest of similar area over cells in a fluorescence video (2D+time). It then gets ROIs means over time and performs signal denoising: fixes photobleaching and separates signal from noise by means of blind source separation (with or without wavelet filtering).
haesleinhuepf/napari-mm
Napari plugin to load and visualize 3D image time series saved by Map Manager
haesleinhuepf/napari-multitask
Multitasking on napari
haesleinhuepf/napari-npe2-test
haesleinhuepf/napari-pillow-image-processing
Process images using pillow from within napari.
haesleinhuepf/napari-pymeshlab
Interfaces between napari and pymeshlab library to allow import, export and construction of surfaces.
haesleinhuepf/napari-tabu
haesleinhuepf/napari-text-layer
Text layer for bio-image annotation.
haesleinhuepf/napari-workflow-inspector-feedstock
A conda-smithy repository for napari-workflow-inspector.
haesleinhuepf/splineslicer
A python library for slicing nD images along splines.
haesleinhuepf/STRESS
haesleinhuepf/tifffile
Read and write TIFF files. Forked from https://pypi.org/project/tifffile