clEsperanto/pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Jupyter NotebookBSD-3-Clause
Issues
- 6
median_sphere filter fails on large images
#316 opened by sebherbert - 7
CLAHE
#306 opened by haesleinhuepf - 4
the example image at https://imagej.nih.gov/ij/images/blobs.gif has moved https://imagej.net/images/blobs.gif
#339 opened by truatpasteurdotfr - 0
bounding_box() prints a debug message
#333 opened by thawn - 6
POCL BUILD_PROGRAM_FAILURE
#332 opened by MariusCausemann - 3
Discrepancy in Results: Applying Top Hat Morphological Operation on Microscopy Data Volume
#331 opened by dxvidparham - 2
erode_labels also relabels all labels
#330 opened by MariusCausemann - 4
Build program failure
#329 opened by somas193 - 3
- 0
clij-opencl-kernels
#325 opened by haesleinhuepf - 0
naming of functions
#324 opened by haesleinhuepf - 2
- 4
Ambiguous call to the convert_uint_sat function
#322 opened by Robin1em - 0
- 0
- 1
Convert numpy array to OCLArray?
#318 opened by ajsc4 - 1
Citing pyclesperanto?
#319 opened by ajsc4 - 3
opencl support on google colab broken
#300 opened by haesleinhuepf - 19
Shift in z planes of the deskewed stack
#278 opened by oleksiievetsno - 5
Jupyter notebook Kernel crashes while using pyclesperanto in Ubuntu 22.04.2 on WSL2, Windows 11
#317 opened by somas193 - 1
Tests fail since release of scikit-image 0.20.0
#274 opened by haesleinhuepf - 0
- 0
implement scaling with anti-aliasing
#314 opened by haesleinhuepf - 9
affine transform debug
#310 opened by iionichi - 0
add `cle.average_pooling` function
#313 opened by thawn - 2
Canny Edge detection
#307 opened by haesleinhuepf - 0
Skeletonization
#312 opened by haesleinhuepf - 5
3D labeling
#309 opened by indrajeettambe - 0
- 0
find_boundaries alias for detect_label_edges
#305 opened by haesleinhuepf - 1
Read 0 outside image (instead of clamp-to-edge)
#302 opened by haesleinhuepf - 3
package is not on conda-forge
#298 opened by thawn - 3
np.flip overwrites clesperanto array with the content of the first element of the respective axis
#294 opened by thawn - 2
could not find documentation for contributors
#275 opened by thawn - 7
- 1
in v0.23.3 calling enumerate and zip on arrays created with cle.create() throws ValueError: Only 2D or 3D array are supported.
#290 opened by thawn - 0
distance between two groups of centroids
#289 opened by jackyko1991 - 0
set to set comparison memory minimisation
#288 opened by allysonryan - 2
non-binary representation in neighbourhood meshes
#287 opened by allysonryan - 0
draw_mean_intensity_between_centroids_mesh
#286 opened by haesleinhuepf - 0
add alias 'draw_mesh_between_n_nearest_labels' for 'draw_mesh_between_n_closest_labels'
#285 opened by haesleinhuepf - 5
- 2
x and y **minimum position** projections
#272 opened by ClementCaporal - 0
- 2
Some pytests fail
#280 opened by paxcalpt - 0
- 2
x,y,z ?mix? in 3D Image Segmentation demo
#266 opened by ClementCaporal - 1
I think this link might be broken
#271 opened by paxcalpt - 6
Default GPU selection
#270 opened by jo-mueller - 3
standard deviation vs. standard error of the mean
#265 opened by thawn