Pinned Repositories
cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
cli
GitHub’s official command line tool
clij2-docs
Documentation for CLIJ2
CSBDeep_fiji
Deproj
Deprojection of a 2D segmentation onto a 2.5D mesh
EHT-analysis
ilastik
ilastik-shell, applets, and workflows to string them together.
napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
PointPatternQuest
stitchingMacro
performs a flat field correction followed by a 2D+t stitching, registration and binarization
sebherbert's Repositories
sebherbert/stitchingMacro
performs a flat field correction followed by a 2D+t stitching, registration and binarization
sebherbert/Deproj
Deprojection of a 2D segmentation onto a 2.5D mesh
sebherbert/cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
sebherbert/cli
GitHub’s official command line tool
sebherbert/clij2-docs
Documentation for CLIJ2
sebherbert/CSBDeep_fiji
sebherbert/EHT-analysis
sebherbert/ilastik
ilastik-shell, applets, and workflows to string them together.
sebherbert/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
sebherbert/PointPatternQuest
sebherbert/pyHiM
Multiplexed DNA-FISH data analysis pipeline
sebherbert/snakemake-workflows
snakemake workflows produced, tested and used at MPI CBG
sebherbert/starfish
starfish: unified pipelines for image-based transcriptomics
sebherbert/volumina
Volume Slicing and Editing