jackyko1991
Bioimage Analyst at the Oxford-Zeiss Centre of Excellence, University of Oxford Interested in biomedical image processing with machine learning-based technique
University of OxfordUnnited Kingdom
Pinned Repositories
Bayesian-Image-Label-Correction
Refining labeled images using Bayesian classifier
Image-Transform
A python implementation for affine transformation on 2D and 3D images
Intracranial-CFD
Medical-Image-Classifier
Neural network classifier for medical image using Tensorflow
Multiplanar-Reconstruction
A simple C++ software for curved multiplanar reconstruction.
surface-registration-tool
This software register two surface meshes by iterative closest point method.
unet3d-pytorch
Unet for 3D nifti images using pytorch
Vessel-Centerline-Extraction
An interactive software to extract vessel centerline
Vessel-Clipper
Clip vessel surface with user input centerlines
vnet-tensorflow
Implementation of vnet in tensorflow for medical image segmentation
jackyko1991's Repositories
jackyko1991/vnet-tensorflow
Implementation of vnet in tensorflow for medical image segmentation
jackyko1991/Vessel-Centerline-Extraction
An interactive software to extract vessel centerline
jackyko1991/Medical-Image-Classifier
Neural network classifier for medical image using Tensorflow
jackyko1991/Multiplanar-Reconstruction
A simple C++ software for curved multiplanar reconstruction.
jackyko1991/Vessel-Clipper
Clip vessel surface with user input centerlines
jackyko1991/Intracranial-CFD
jackyko1991/Parent-Vessel-Reconstruction
An objective approach to digital removal of saccular aneurysms
jackyko1991/HealthyPi-Python-Interface
A Python Interface for ProtoCentral HealthyPi v3
jackyko1991/Vessel-Smoothing
A simple CLI tool to smooth vascular surface
jackyko1991/Medical-Variational-Autoencoder
Medical image specialized Tensorflow implementation of VAE
jackyko1991/RNN-Vessel-Classifier
Vascular model classifier using sequence embedded centerline
jackyko1991/Surface-Remesher
A simple tool to resample surface files
jackyko1991/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
jackyko1991/caffe-unet-docker
The U-Net Segmentation server (caffe_unet) for Docker
jackyko1991/docker-example-omero
OMERO Docker compose example
jackyko1991/docs
TensorFlow documentation
jackyko1991/FCS_point_correlator
jackyko1991/flann
Fast Library for Approximate Nearest Neighbors
jackyko1991/jackyko1991
My personal repository.
jackyko1991/jackyko1991.github.io
Source code for my personal development blog
jackyko1991/MaiHon
jackyko1991/microscope
Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.
jackyko1991/pcl
Point Cloud Library (PCL)
jackyko1991/plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
jackyko1991/pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
jackyko1991/pyimagej-TrackMate
Python integration of TrackMate plugin in Fiji
jackyko1991/siFRC
Python implementation of the Fourier Ring Correlation (FRC) to determine image resolution
jackyko1991/tracking_evaluation
Reimplementation of TRA measure
jackyko1991/Ultrack-Cluster
BMRC cluster run test script from Ultrack
jackyko1991/voxelmorph
Unsupervised Learning for Image Registration