haesleinhuepf
#GenerativeAI, LLMs, (Image) Data Analysis, GPUs @ScaDS / Uni Leipzig, @NFDI4BIOIMAGE, @GloBIAS-BioimageAnalysts, @NEUBIAS
Data Science Center ScaDS.AI, Uni LeipzigLeipzig, Germany
Pinned Repositories
pyclesperanto_prototype
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
apoc
Accelerated Pixel and Object Classifiers (APOC)
bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
blablado
blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.
git-bob
git-bob uses AI to solve Github-issues and review pull-requests. It runs inside the Github CI, no need to install anything on your computer.
human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
haesleinhuepf's Repositories
haesleinhuepf/apoc
Accelerated Pixel and Object Classifiers (APOC)
haesleinhuepf/awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
haesleinhuepf/napari-tools-menu
haesleinhuepf/napari-blender-bridge
Transfer surface layers between Napari and Blender.
haesleinhuepf/napari-laptrack
Tracking particles in Napari, using the LapTrack library
haesleinhuepf/napari-animated-gif-io
Open and save 3D image stacks as animated gifs in napari
haesleinhuepf/napari-owncloud
Browse folders and images in owncloud/nextcloud servers and open them using just a double-click!
haesleinhuepf/label_neighbor_filters
haesleinhuepf/napari-assistant-plugin-generator
Auto-generate python code from within napari to make napari-assistant compatible plugins
haesleinhuepf/napari-layer-details-display
haesleinhuepf/MicroscopyForBeginnersReferenceGuide
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
haesleinhuepf/cookiecutter-napari-assistant-plugin
Cookiecutter for napari plugins
haesleinhuepf/empanada-napari
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
haesleinhuepf/geisterr-usage-statistics
haesleinhuepf/imaging-demo-kit
imaging-demo-kit
haesleinhuepf/map-of-github-data
This repository contains tiles and data for the map of github
haesleinhuepf/napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
haesleinhuepf/napari-hub-collections
collections of plugins for the napari hub
haesleinhuepf/napari-plugin-search
haesleinhuepf/napari-sam
haesleinhuepf/napari-segment
haesleinhuepf/napari-stress
Interactive surface analysis in napari for bio-mechanical stress measurement
haesleinhuepf/napari-tyssue
haesleinhuepf/outer-segment-analysis
This repository describes a process to quantify outer segments of mice retina stained for cone-specific markers.
haesleinhuepf/palmari
Napari plugin to process PALM recordings (Photoactivated localization microscopy)
haesleinhuepf/scripts
haesleinhuepf/SMO
Robust and unbiased estimation of the background distribution for fluorescence microscopy.
haesleinhuepf/vedo
A python module for scientific analysis of 3D data
haesleinhuepf/vessel-express-napari
haesleinhuepf/vispy
Main repository for Vispy