dpshepherd

QI2 Lab Department of Physics, Center for Biological Physics Arizona State University

Tempe, AZ

Pinned Repositories

ACsN_v1.5
Language:Python00
GeoMXprocessing
Code to extract ROIs from Nanostring GeoMX OME-TIFF
Language:Jupyter Notebook00
npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
Language:Python00
OpenMicroscopy
Non-comprehensive list of projects and resources related to open microscopy.
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PHY333_S2022
iPython notebooks for PHY333 Spring 2021
Language:Jupyter Notebook00
PHY333_S2024
Fitting codes for Spring 2024 PHY 333: Electronics
Language:Jupyter Notebook00
PHY452_F2023
Google Colab notebooks for PHY452 Optics Fall 2023
Language:Jupyter Notebook00
pycro-manager
Python control of micro-manager for customized data acquisition
Language:Python00
mcSIM
Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.
Language:Python53 1 513
OPM
Control, reconstruction, and analysis code for oblique plane microscopy.
Language:Python21 1 67

dpshepherd/ACsN_v1.5
Language:Python00
dpshepherd/GeoMXprocessing
Code to extract ROIs from Nanostring GeoMX OME-TIFF
Language:Jupyter Notebook00
dpshepherd/npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
Language:Python00
dpshepherd/OpenMicroscopy
Non-comprehensive list of projects and resources related to open microscopy.
00
dpshepherd/PHY333_S2022
iPython notebooks for PHY333 Spring 2021
Language:Jupyter Notebook00
dpshepherd/PHY333_S2024
Fitting codes for Spring 2024 PHY 333: Electronics
Language:Jupyter Notebook00
dpshepherd/PHY452_F2023
Google Colab notebooks for PHY452 Optics Fall 2023
Language:Jupyter Notebook00
dpshepherd/pycro-manager
Python control of micro-manager for customized data acquisition
Language:Python00
dpshepherd/PySpots
Language:Jupyter Notebook0 0 00
dpshepherd/spatial
All thing spatial, from MERFISH, to histology
Language:Jupyter Notebook0 0 00