Pinned Repositories
bioformats2raw
Bio-Formats image file format to raw format converter
omero-ms-image-region
OMERO image region Vert.x asynchronous microservice server
raw2ometiff
Raw format to OME-TIFF converter
deployment
Deployment infrastructure for the Image Data Resource
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
plant-tissue
A collection of MATLAB tools to analyse the division planes of plant cells and plant tissues
sbesson's Repositories
sbesson/omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
sbesson/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
sbesson/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
sbesson/omero-server-jep403
A minimal OMERO.server running on strongly encapsulated JDK
sbesson/bio-formats-documentation
Bio-Formats documentation
sbesson/bio-formats-examples
Example code that demonstrates the Bio-Formats API in Java and C++
sbesson/bioformats2raw
Bio-Formats image file format to raw format converter
sbesson/deployment
Deployment infrastructure for the Image Data Resource
sbesson/NGFF-Converter
NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
sbesson/ome-common-java
Java library providing common functionality for all OME Java components
sbesson/ome-contributing
sbesson/ome-omero-roitool
OME and OMERO ROI tool
sbesson/omero-blitz
Gradle project containing Ice remoting code for OMERO
sbesson/omero-cli-render
OMERO command-line tool for rendering
sbesson/omero-dropbox
OMERO.dropbox server for watching directories
sbesson/omero-figure
An OMERO.web app for creating Figures from images in OMERO
sbesson/omero-gateway-java
Gradle project containing OMERO Java Client Library
sbesson/omero-mapr
sbesson/omero-ms-core
OMERO Vert.x microservice core
sbesson/omero-ms-image-region
OMERO image region Vert.x asynchronous microservice server
sbesson/omero-ms-pixel-buffer
OMERO pixel buffer Vert.x asynchronous microservice server
sbesson/omero-ms-thumbnail
OMERO thumbnail Vert.x asynchronous microservice server
sbesson/omero-py
Python project containing Ice remoting code for OMERO
sbesson/omero-web
Django-based OMERO.web client
sbesson/omero-zarr-pixel-buffer
OMERO Zarr Pixel Buffer Implementation
sbesson/qupath-extension-omero-web
QuPath extension to work with images through OMERO's web API
sbesson/www.openmicroscopy.org
sbesson/zarr-java
Java implementation of the Zarr Specification
sbesson/zarr-specs
Zarr core protocol for storage and retrieval of N-dimensional typed arrays
sbesson/zarr2zarr