Issues
- 2
How TIFF stack To OME-zarr
#236 opened by Iamlearn - 0
Better fix for illegal access warnings
#239 opened by melissalinkert - 3
Conversion problem for the 4th channel
#244 opened by Portglass - 0
Look at performance of writing to s3
#249 opened by melissalinkert - 1
Add -no-sas option as exists in bfconvert
#250 opened by dsudar - 4
Docker containers for new releases
#243 opened by krokicki - 3
Convert to yx or cyx
#180 opened by LucaMarconato - 4
Cannot convert svs to ome-tiff
#175 opened by gsakkis - 2
- 2
Topic addition: "ome-zarr-converters"
#225 opened by joshmoore - 0
RFE: omit series directory if unneeded
#224 opened by joshmoore - 3
java.lang.NegativeArraySizeException with large tiff input with zip compression
#217 opened by blowekamp - 2
Add documentation for OpenCV to README
#222 opened by perlman - 0
Please bump OpenCV for ARM support
#210 opened by CGDogan - 0
Better documentation for BioTek
#214 opened by melissalinkert - 4
- 1
Batch processing
#206 opened by Pablo1990 - 1
how to downsample isotropically
#208 opened by d-v-b - 2
Channel mass up into timestep
#205 opened by tymiao1220 - 2
how to specify scale, translation, units
#207 opened by d-v-b - 1
don't add extra dimensions
#209 opened by d-v-b - 3
Downscale factor option
#193 opened by will-moore - 1
NGFF-Converter 1.1.4 fails to convert CZI file which opens normally in Fiji using BioFormats
#194 opened by zeissmicroscopy - 7
- 3
Channel selection?
#200 opened by blowekamp - 3
ND2 to OMETIFF conversion error
#184 opened by snehashis-roy - 4
image shifted when converting
#117 opened by vladpopovici - 0
Short option for flattened layout?
#132 opened by melissalinkert - 1
ZipStore as an output option
#164 opened by prete - 4
bioformats2raw produces big-endian data type (>u2) from MRC and CZI of unsigned int 16
#197 opened by blowekamp - 7
- 9
conversion fails midway through big h5 file
#187 opened by will-moore - 1
- 4
Can't remove series from directory structure with `--scale-format-string`
#179 opened by LucaMarconato - 1
Could not initialize class org.blosc.IBloscDll
#182 opened by wearebk - 0
`--pixel-type` behaves incorrectly
#154 opened by melissalinkert - 0
- 0
Color metadata & single-channel use case
#170 opened by sbesson - 5
OME/METADATA.ome.xml for Plate doesn't use
#161 opened by will-moore - 1
0.5.0 prep
#140 opened by melissalinkert - 0
Enumerate series in zarr metadata?
#126 opened by melissalinkert - 1
- 1
bioformats2raw in conda-forge or bioconda
#159 opened by jkh1 - 3
Add `MetadataOnly` to `METADATA.ome.xml`?
#137 opened by melissalinkert - 5
Unable to convert slides with PNG images
#124 opened by xkacenga - 2
Delete existing memo files by default?
#136 opened by melissalinkert - 3
Conversion of image with large dimensions fails
#138 opened by korseby - 18
Conversion of image with uneven dimensions fails
#139 opened by korseby - 3
Stacking channels before converting to raw
#130 opened by lstrgar - 6
Null Pointer Exception error
#127 opened by ajaysingh096