Pinned Repositories
big-image-viewer
Simple JavaFX viewer for large images backed by http://github.com/openmicroscopy/bioformats
bio-formats-documentation
Bio-Formats documentation
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
bioformats-examples
Example code that demonstrates the Bio-Formats API in Java and C++
fiji
Fiji Is Just ImageJ
netcdf
Patched version of the netCDF Java library
ome-common-java
Java library providing common functionality for all OME Java components
ome-documentation
Sphinx-based documentation for the Open Microscopy Environment
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
tkn
Terminal Keynote - A hack for terminal-based talks
melissalinkert's Repositories
melissalinkert/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
melissalinkert/bio-formats-documentation
Bio-Formats documentation
melissalinkert/ome-common-java
Java library providing common functionality for all OME Java components
melissalinkert/bio-formats-octave-docker
Bio-Formats Octave container based on openmicroscopy/octave
melissalinkert/bioformats2raw
Bio-Formats whole slide imaging to raw format converter
melissalinkert/cidre
A general illumination correction method for optical microscopy.
melissalinkert/file-leak-detector
Java agent that detects file handle leak
melissalinkert/IDC-Tutorials
Self-guided notebook tutorials to help get started with using IDC
melissalinkert/isyntax2raw-1
iSyntax to raw format converter
melissalinkert/jpegxl-sandbox
melissalinkert/jxrlib
melissalinkert/jzarr
A Java implementation of the API offered by the Python zarr package
melissalinkert/libjpeg-turbo-java
libjpeg-turbo Java build
melissalinkert/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
melissalinkert/NGFF-Converter
NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
melissalinkert/ome-codecs
OME image compression (coder-decoder implementations)
melissalinkert/ome-jai
OME Java ImageIO fork (deprecated)
melissalinkert/ome-mdbtools
Java API to handle Microsoft MDB format (Access). Used by Bio-Formats for Zeiss LSM metadata in MDB files.
melissalinkert/ome-metakit
Library for reading Metakit database files
melissalinkert/ome-model
OME model (specification, code generator, implementation)
melissalinkert/ome-omero-roitool
OME and OMERO ROI tool
melissalinkert/ome-stubs
Stubs for optional third-party components
melissalinkert/omero-blitz
Gradle project containing Ice remoting code for OMERO
melissalinkert/omero-romio
Gradle project for the ROMIO library of OMERO
melissalinkert/qupath
QuPath - Open Source Digital Pathology
melissalinkert/qupath-extension-omero
QuPath extension to work with images through OMERO's web API
melissalinkert/raw2ometiff-1
Raw format to OME-TIFF converter
melissalinkert/scaling-sandbox
melissalinkert/www.openmicroscopy.org
OME main website
melissalinkert/zarr2zarr