ome-zarr-converter
There are 14 repositories under ome-zarr-converter topic.
glencoesoftware/bioformats2raw
Bio-Formats image file format to raw format converter
spatial-image/multiscale-spatial-image
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
scalableminds/webknossos-libs
Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
thewtex/ngff-zarr
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
Euro-BioImaging/BatchConvert
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
saalfeldlab/n5-ij
ImageJ convenience layer for N5
fractal-analytics-platform/fractal-tasks-core
Main tasks for the Fractal analytics platform
InsightSoftwareConsortium/ITKIOOMEZarrNGFF
ITK IO for images stored in OME-Zarr format.
fmi-faim/faim-ipa
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
FrancisCrickInstitute/OmeSliCC
Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
BioinfoTongLI/to_ome_tif
nextflow DSL2 pipeline (leveraging /[raw2ometiff](https://github.com/glencoesoftware/raw2ometiff)) to convert almost any images to ome.tiff/ome.zarr
BodenmillerGroup/mcd2zarr
Command line tool to convert MCD files to Zarr
DistributedScience/Distributed-OMEZarrCreator
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.