fractal-analytics-platform/fractal-tasks-core

Issues

• Move to anndata 0.11

  #833 opened 4 months ago by tcompa
  0

• Fix upload/download github actions and coverage

  #831 opened 4 months ago by tcompa
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• Run `pip` tests regularly

  #828 opened 4 months ago by tcompa
  0

• Napari-workflows tests fail with stacview 0.9.0

  #827 opened 4 months ago by tcompa
  4

• Relax pip v24.0 pin in `manifest_external_packages.yml`

  #773 opened 4 months ago by tcompa
  0

• Review "UserWarning: Pydantic serializer warnings: Expected `int` but got `int64`" in cellvoyager-to-ome-zarr init task

  #824 opened 4 months ago by tcompa
  0

• Update zenodo dataset, setting `channel.active` to True

  #823 opened 4 months ago by tcompa
  2

• Relax numpy dependency to `<=2.1.0`

  #821 opened 4 months ago by tcompa
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• Ensure correct ordering of acquisition in multiplexing converter

  #819 opened 4 months ago by jluethi
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• Fix docs build

  #815 opened 4 months ago by tcompa
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• Use new Zenodo datasets in tests

  #753 opened 4 months ago by jluethi
  2

• Add min & mean projection

  #813 opened 4 months ago by jluethi
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• Make multiplexing converter work with arbitrarily named acquisitions

  #782 opened 4 months ago by jluethi
  1

• Import errors when using `tasks._registration_utils.py` without `fractal-tasks` extra

  #803 opened 5 months ago by tcompa
  0

• Cellpose output ROI table label duplication when using masking ROI table input

  #810 opened 5 months ago by jluethi
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• Fix error handling in `calculate_registration_image_based`

  #798 opened 5 months ago by tcompa
  1

• Modify call signature of cellpose task

  #807 opened 5 months ago by tcompa
  1

• Release 1.1.1

  #804 opened 5 months ago by tcompa
  1

• Take decision on Pydantic version for core library and dev tools.

  #802 opened 5 months ago by tcompa
  2

• Improve testing of JSON-schema generation

  #792 opened 5 months ago by tcompa
  1

• Move JSON-schema generation to Pydantic v2

  #791 opened 5 months ago by tcompa
  0

• Review tests of external-package JSON-Schema generation

  #796 opened 5 months ago by tcompa
  1

• Move core-library and tasks to Pydantic V2

  #790 opened 5 months ago by tcompa
  0

• Allow overwrite of existing image in apply registration

  #800 opened 5 months ago by jluethi
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• Improve type hints and docstring for calculate_registration_image_based

  #797 opened 5 months ago by tcompa
  4

• Support 2D yx data in Cellpose task

  #788 opened 5 months ago by jluethi
  0

• Test JSON-Schema generation on multiple packages

  #757 opened 6 months ago by tcompa
  2

• Cellpose relabeling & masked_loading interaction leads to relabeling objects multiple times

  #785 opened 5 months ago by jluethi
  0

• Bug fix in masked_loading ROI table reading in case that obs label ID is string of a float

  #783 opened 5 months ago by nrepina
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• ROI upsampling issue when original image resolution is not divisible by 2

  #771 opened 6 months ago by jluethi
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• [ngio] Refactor masked_loading_wrapper logic to do relabeling in the masking step

  #787 opened 6 months ago by jluethi
  1

• Make acquisition metadata optional for Plate pydantic model

  #748 opened 6 months ago by jluethi
  0

• MIP task leads to missing .zgroup file on the row level

  #780 opened 6 months ago by jluethi
  0

• Review/optimize use of `get_overlapping_pairs_3D` in Cellpose task

  #779 opened 6 months ago by tcompa
  3

• Cellpose task: Output ROI table creation performance scaling

  #764 opened 6 months ago by jluethi
  2

• Add operio-fractal to task list on doc page

  #776 opened 6 months ago by jluethi
  3

• Verify compatibility with Python 3.12

  #770 opened 6 months ago by tcompa
  2

• Relaxing pydantic requirements

  #760 opened 6 months ago by lorenzocerrone
  6

• Relax Pydantic V1 constraint from `==1.10.16` to `>=1.10.16`

  #768 opened 6 months ago by tcompa
  3

• Doc updates

  #766 opened 6 months ago by tcompa
  0

• Make Cellpose task work for OME-Zarrs without pyramids

  #742 opened 7 months ago by BioinfoTongLI
  4

• Possible path towards improvements of tasks JSON schemas

  #758 opened 7 months ago by tcompa
  1

• [cellpose segmentation task] `label` or `wavelength_id` for ChannelInputModel

  #762 opened 7 months ago by BioinfoTongLI
  1

• Add Fractal Helper tasks to list of tasks

  #754 opened 7 months ago by jluethi
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• Add APX package to the task list on doc page

  #752 opened 7 months ago by jluethi
  3

• Allow developers to influence schema building in finer detail

  #755 opened 7 months ago by jluethi
  1

• Allow conditional fields & either/or logic

  #756 opened 7 months ago by jluethi
  2

• Support `Enum` task arguments

  #745 opened 7 months ago by tcompa
  6

• Issue after MIP: Images shown empty in napari

  #735 opened 8 months ago by jluethi
  2

• Update README

  #729 opened 8 months ago by jluethi
  0