lorenzocerrone
Scientific Software Developer & Computer Vision Researcher
@fractal-analytics-platform Switzerland
Pinned Repositories
ngio
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
-python-project-template
cremi_python
Python scripts to read and write the CREMI hdf5 file format.
plantseg-fractal-tasks
python-jimmy
It's just pyYaml plus some extras
python-seg2mesh
Simple utility for extracting a single (or multiple) label from a h5 segmentation into a ply mesh
random-walker-tools
Random Walker Segmentation algorithm implementation plus some basic graph tools
zarr-ls
Simple CLI to explore interactively a Zarr file
pytorch-LearnedRandomWalker
Pytorch implementation of the LearnedRandomWalker module
lorenzocerrone's Repositories
lorenzocerrone/zarr-ls
Simple CLI to explore interactively a Zarr file
lorenzocerrone/cremi_python
Python scripts to read and write the CREMI hdf5 file format.
lorenzocerrone/plantseg-fractal-tasks
lorenzocerrone/python-seg2mesh
Simple utility for extracting a single (or multiple) label from a h5 segmentation into a ply mesh
lorenzocerrone/-python-project-template
lorenzocerrone/conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
lorenzocerrone/data-analysis-tools-in-python-2022
Material for the python course in data analysis tools.
lorenzocerrone/intro-to-scientific-python
lorenzocerrone/magicgui
build GUIs from python functions, using magic.
lorenzocerrone/mitotic-cell-classification
lorenzocerrone/python-jimmy
It's just pyYaml plus some extras
lorenzocerrone/random-walker-tools
Random Walker Segmentation algorithm implementation plus some basic graph tools
lorenzocerrone/fractal-tasks-core
Main tasks for the Fractal analytics platform
lorenzocerrone/fractal-tasks-template
Template for a Fractal-compatible package of Python tasks
lorenzocerrone/generalized-convs-rs
Generalized Convolutions in Rust
lorenzocerrone/lorenzocerrone
MyProfile :)
lorenzocerrone/lorenzocerrone.github.io
My personal page
lorenzocerrone/moebius-game-of-life
lorenzocerrone/ome-zarr-images
lorenzocerrone/plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
lorenzocerrone/python-cacioepepe
lorenzocerrone/python-cacioepepe-light
https://lorenzocerrone.github.io/python-cacioepepe-light/
lorenzocerrone/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
lorenzocerrone/ray-vs-multiprocessing
Basic experiment to benchmark ray against python multiprocesising
lorenzocerrone/scarabocchi
Barebone tools for interactive image scribbles on python
lorenzocerrone/soapy
lorenzocerrone/StarDist-Zarr-RSE-exercise
Take home exercise for the RSE position
lorenzocerrone/temp_ci
lorenzocerrone/uni-heidelberg-phd-thesis-latex-template
PhD Thesis LaTeX Template, according to the rules of Combined Faculty of Natural Sciences and Mathematics, Heidelberg University, Germany
lorenzocerrone/zarrs
A rust library for the Zarr V3 storage format for multidimensional arrays and metadata