Euro-BioImaging/BatchConvert
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
PythonMIT
Issues
- 1
- 2
ValueError: conflicting sizes for dimension 'C' after converting one channel into ome.tiff image
#24 opened by DorianKauffmann - 0
How to handle config files in multi-user env
#21 opened by tischi - 0
Chunk dimension names
#20 opened by tischi - 0
Default values are not shown...
#19 opened by tischi - 0
Zlib compression
#18 opened by tischi - 0
Not nested
#17 opened by tischi - 0
Configuration file
#16 opened by tischi - 0
User specific Nextflow workdir on HPC
#15 opened by tischi - 0
No funny characters in file and folder names
#14 opened by tischi - 0
Typos in instructions
#13 opened by tischi - 0
Specify where to build the singularity container when using BatchConvert on HPC
#12 opened by tatianawoller - 0
Nextflow command as a job in the cluster.
#11 opened by bugraoezdemir - 0
Add option to get configuration files
#4 opened by bugraoezdemir