fmi-faim/faim-ipa

Issues

• Integrate examples into tests

  #164 opened 5 months ago by imagejan
  0

• Histogram computation and ome-zarr metadata

  #147 opened 6 months ago by imagejan
  4

• cellvoyager.StackedTile: consider making _paths field public

  #116 opened 2 months ago by imagejan
  2

• Consider using xarray-ome-ngff, or ngio

  #112 opened 8 months ago by imagejan
  0

• Add convenience functions to use WellAcquistions with multiview-stitcher

  #109 opened 9 months ago by tibuch
  1

• Migrate `write_zarr` to here.

  #98 opened 2 months ago by imagejan
  1

• Visview Stack Acquisition - Stack size?

  #87 opened 2 months ago by tibuch
  1

• Update README and example notebooks/scripts.

  #86 opened 2 months ago by imagejan
  1

• Create 3D Tile for CV and MD acquisitions

  #83 opened 2 months ago by tibuch
  2

• Add processors

  #115 opened 2 months ago by tibuch
  2

• Add tests for visiview

  #148 opened 6 months ago by tibuch
  1

• Created logger does not log INFO level

  #167 opened 5 months ago by tibuch
  3

• Fix or ignore remaining ruff linting issues

  #166 opened 5 months ago by imagejan
  0

• Use lower-case module names everywhere

  #117 opened 5 months ago by imagejan
  1

• Consider hatch-conda for mobie-related tests on CI

  #158 opened 6 months ago by imagejan
  1

• Blob detection finds fewer blobs

  #160 opened 6 months ago by tibuch
  0

• Rework `fuse_fw`

  #62 opened 6 months ago by tibuch
  0

• Rework `fuse_rev`

  #63 opened 6 months ago by tibuch
  0

• Issue in stitching.stitching_utils.fuse_linear

  #154 opened 6 months ago by fstur
  4

• CellVoyager: parse wavelength from 'Acquisition' instead of 'Target'

  #152 opened 6 months ago by imagejan
  0

• Add `typos` pre-commit hook

  #131 opened 6 months ago by imagejan
  1

• Re-enable uploading to codecov in CI

  #129 opened 6 months ago by imagejan
  0

• Add spot-detection utils

  #114 opened 6 months ago by tibuch
  0

• Handle transmission channel metadata

  #143 opened 6 months ago by tibuch
  0

• CellVoyager Z adjustment: support simultaneous acquisition

  #127 opened 7 months ago by imagejan
  1

• Missing planes after stitching

  #137 opened 7 months ago by tibuch
  1

• Labelling of row/column in HCS

  #130 opened 8 months ago by jeskowagner
  5

• Add util to create and resolve paths relative to the git-root directory

  #135 opened 7 months ago by tibuch
  0

• pydantic version

  #132 opened 8 months ago by tibuch
  0

• Use new test datasets for MolDev ImageXpress

  #119 opened 8 months ago by imagejan
  1

• Converter with build_acquisition_mask creates invalid zarr container

  #122 opened 8 months ago by tibuch
  0

• MoBIE shows scalebar in pixels instead of provided unit

  #99 opened 10 months ago by tibuch
  0

• Consolidate StackedTile classes

  #118 opened 8 months ago by imagejan
  0

• Rename repo to faim-ipa

  #113 opened 8 months ago by tibuch
  11

• z adjustment: be more tolerant with missing z positions

  #100 opened 8 months ago by imagejan
  1

• Add dask-array support to UIntHistogram

  #110 opened 9 months ago by tibuch
  0

• Try out multiview-stitcher with WellAcquistion

  #105 opened 9 months ago by tibuch
  1

• Test for imageXpress mixed acquistion fails

  #107 opened 9 months ago by tibuch
  0

• ZAdjustedStackAcquisition: multiple trace log files

  #94 opened 10 months ago by imagejan
  0

• Support single-channel data from ImageXpress

  #89 opened 10 months ago by imagejan
  5

• Issue Collection

  #91 opened a year ago by tibuch
  0

• Stitching with 3D tiles

  #81 opened a year ago by tibuch
  1

• Send dask graphs sequentially to scheduler

  #72 opened a year ago by tibuch
  2

• Tile order along y-axis is wrong for Yokogawa stitching.

  #73 opened a year ago by tibuch
  0

• Wrong wells are written to the `.zattrs` of the plate

  #74 opened a year ago by tibuch
  0

• Dask - Local Cluster in Subprocess

  #70 opened a year ago by tibuch
  0

• Converting a PlateAcquisition takes very long

  #65 opened a year ago by tibuch
  0

• Shifting in YX is slow

  #66 opened a year ago by tibuch
  0

• BoundingBox5D overlap check is slow

  #67 opened a year ago by tibuch
  0

• Rework `write_labels_to_group`

  #64 opened a year ago by tibuch
  0