scalableminds/webknossos-libs

Issues

• Support other units than nm for dataset voxel size

  #1076 opened 10 days ago by fm3
  5

• Announce datasets with permissions

  #1138 opened 10 days ago by normanrz
  0

• Harden concurrency assertions

  #1080 opened 2 months ago by normanrz
  0

• wk.Annotation constructor should require organization name

  #1015 opened 5 months ago by fm3
  2

• RGB tiff file conversion should create RGB datasets

  #1135 opened 13 days ago by markbader
  0

• Logging during wkw/zarr conversion interrupts progress bar

  #1093 opened 19 days ago by markbader
  0

• Dataset.from_images tif conversion failed with AttributeError in PimsImages

  #947 opened 19 days ago by fm3
  1

• Downsampling and upsamping fails for nd zarr3 datasets

  #1092 opened a month ago by markbader
  0

• Margin padding fails for layer bounding boxes

  #1117 opened a month ago by AndreaNathansen
  1

• Save performance by opening zarr array lazily in open_remote?

  #1127 opened a month ago by fm3
  0

• JSON decode error in add_layer_from_images

  #1123 opened a month ago by markbader
  0

• Suffixes with capital letters should be valid too

  #1099 opened 2 months ago by markbader
  0

• Ignore trailing slashes in URL comparisons

  #910 opened a year ago by daniel-wer
  0

• Exception when creating dataset from tiff files

  #998 opened 2 months ago by frcroth
  1

• Docs issue (Dataset): "cls" is never explained

  #1088 opened 2 months ago by pgunn
  2

• Dataset.from_images should correctly handle 3D tiff

  #960 opened 2 months ago by philippotto
  0

• Investigate support for nd tifffiles with tifffile dependency

  #1029 opened 2 months ago by markbader
  0

• Support IMS images in Dataset.from_images

  #926 opened 2 months ago by fm3
  0

• Webknossos CLI download annotation

  #985 opened 2 months ago by markbader
  0

• Move functional parts of merge volume annotation CLI to Dataset/Annotation classes

  #1006 opened 2 months ago by markbader
  0

• Add segment bounding boxes to annotation

  #1077 opened 2 months ago by normanrz
  0

• webknossos-libs pydoc has bad strings in it

  #1071 opened 2 months ago by pgunn
  2

• upload command on windows: backslashes on server, invalid dataset

  #1066 opened 2 months ago by fm3
  0

• Python 3.12 support

  #1060 opened 3 months ago by thopp-tudelft
  0

• Add layer_name to Dataset.from_images

  #1053 opened 3 months ago by normanrz
  0

• Data read via open_as_remote_dataset seems incomplete (black voxels close to bbox border)

  #1058 opened 3 months ago by fm3
  0

• Add set_z method to BufferedSliceWriter for lazy initialization

  #968 opened 3 months ago by philippotto
  0

• wk.Dataset.from_images sets bbox too large

  #961 opened 3 months ago by philippotto
  1

• Dataset.from_images should support NIFTI, recognize .nii

  #931 opened 3 months ago by fm3
  0

• dcm file ending should be recognized as dicom

  #1009 opened 4 months ago by fm3
  1

• BoundingBox should store channel axis information

  #1030 opened 4 months ago by markbader
  0

• Support reading ND data with webknossos-libs

  #928 opened 4 months ago by markbader
  0

• Disable `boto` logging in tests

  #1000 opened 5 months ago by hotzenklotz
  1

• Provide "NULL" shards in annotations

  #974 opened 6 months ago by erjel
  7

• Support Zarr3 Volume Annotation format

  #951 opened 6 months ago by fm3
  0

• Error when uploading annotations with fallback_layer: Resolution restrictions result in zero resolutions

  #984 opened 6 months ago by erjel
  0

• docs imprecise: temporary_volume_layer_copy doesn't return an iterable

  #962 opened 9 months ago by boergens
  2

• Small writes to compressed sharded zarr3 mags are slow

  #964 opened 9 months ago by fm3
  0

• [question] how to provide a conda environment for scheduling SLURM jobs with cluster_tools?

  #957 opened 9 months ago by neuronflow
  1

• Add batch_size for slurm jobs

  #953 opened 9 months ago by normanrz
  0

• webknossos new CLI JSON error with multiprocessing futures

  #919 opened a year ago by elhuhdron
  9

• No satisfying error handling when uploading a dataset with an empty layer

  #940 opened a year ago by cdfhalle
  0

• Expose TaskType information via Task API

  #936 opened a year ago by normanrz
  0

• Parallel uses of BufferedSliceWriter fail with JSONDecodeError

  #908 opened a year ago by fm3
  0

• Make largest_segment_id optional

  #917 opened a year ago by normanrz
  0

• Cluster tools should recognize that cluster time limits were reached

  #921 opened a year ago by daniel-wer
  0

• Dataset.from_images should not add slashes in layer names

  #918 opened a year ago by normanrz
  2

• compressed add_layer_from_images uses too much memory

  #900 opened a year ago by markbader
  0

• Downloading annotation layer with Python library, but downloaded annotation is not the same size as the actual image layer?

  #909 opened a year ago by azatian
  4

• Add axis_order for zarr datasets

  #902 opened a year ago by normanrz
  0