scalableminds/webknossos-libs

Issues

• Function to Transform WKW Datasets

  #1217 opened 7 days ago by Tobias314
  0

• Clarify differences between Dataset.open() and Dataset.open_remote()

  #1216 opened 7 days ago by markbader
  0

• open_remote and open_as_remote_dataset api calls encounter SSL error on some systems

  #1210 opened 13 days ago by daniel-wer
  0

• Single file tiff import leads to storage full

  #1208 opened 24 days ago by normanrz
  0

• Support for renamable datasets

  #1207 opened a month ago by normanrz
  1

• Error downloading task annotation, annotation.download.hybridToFile.failed

  #1205 opened a month ago by erjel
  7

• fyi: datasets created with version v0.14.25 are not backward compatible with v0.14.24

  #1142 opened a month ago by erjel
  1

• Add max_mag to webknossos convert

  #1202 opened a month ago by normanrz
  2

• Access Metadata of Segments & Trees in Annotations

  #1195 opened 2 months ago by fm3
  4

• Save performance by opening zarr array lazily in open_remote?

  #1127 opened 5 months ago by fm3
  0

• BufferedSliceWriter Erroneous on Mags > 1

  #1168 opened 3 months ago by Tobias314
  2

• Use webknossos API v8 (organization_id)

  #1178 opened 3 months ago by fm3
  0

• Accessing list of available remote annotations through Python API

  #1188 opened 3 months ago by filippocastelli
  2

• Cannot add existing tree to new annotation

  #1197 opened 2 months ago by normanrz
  0

• Harden concurrency assertions

  #1080 opened 6 months ago by normanrz
  0

• Major version

  #1200 opened 2 months ago by normanrz
  0

• Add an exisiting zarr array as a mag to a dataset

  #1144 opened 2 months ago by normanrz
  0

• Add more API functions

  #1177 opened 2 months ago by normanrz
  0

• Add dataset/folder metadata

  #1148 opened 2 months ago by normanrz
  0

• Support ND for code paths that include `add_mag_for_existing_files`

  #1194 opened 2 months ago by MichaelBuessemeyer
  0

• Docs issue (Dataset): "cls" is never explained

  #1088 opened 3 months ago by pgunn
  3

• TypeError on import: "TypeError: <class 'webknossos.dataset.properties.LayerProperties'> has no usable non-default attributes"

  #1180 opened 3 months ago by MariusCausemann
  4

• Can't upload new datasets from python API

  #1181 opened 3 months ago by filippocastelli
  8

• Enhance examples usability

  #1172 opened 3 months ago by markbader
  0

• Announce datasets with permissions

  #1138 opened 3 months ago by normanrz
  0

• Ignore trailing slashes in RemoteFolder

  #1161 opened 4 months ago by daniel-wer
  0

• Image stack to dataset process can exhaust ram for large datasets

  #1146 opened 4 months ago by pgunn
  21

• Pims Reader for Knossos Datasets

  #1160 opened 4 months ago by markbader
  0

• Python 3.12 support

  #1060 opened 4 months ago by thopp-tudelft
  0

• Add Image.MAX_IMAGE_PIXELS = None

  #1153 opened 4 months ago by normanrz
  1

• Heuristic to determine batch_size and number of parallel jobs

  #1157 opened 4 months ago by markbader
  0

• Convert single file with CLI

  #1149 opened 4 months ago by normanrz
  1

• Add chunk-shape and shard-shape to convert CLI

  #1145 opened 4 months ago by normanrz
  0

• Add layer-name and mag to compress CLI command

  #1140 opened 4 months ago by normanrz
  0

• Support other units than nm for dataset voxel size

  #1076 opened 4 months ago by fm3
  5

• wk.Annotation constructor should require organization name

  #1015 opened 9 months ago by fm3
  2

• RGB tiff file conversion should create RGB datasets

  #1135 opened 4 months ago by markbader
  0

• Logging during wkw/zarr conversion interrupts progress bar

  #1093 opened 5 months ago by markbader
  0

• Downsampling and upsamping fails for nd zarr3 datasets

  #1092 opened 5 months ago by markbader
  0

• Margin padding fails for layer bounding boxes

  #1117 opened 5 months ago by AndreaNathansen
  1

• JSON decode error in add_layer_from_images

  #1123 opened 5 months ago by markbader
  0

• Suffixes with capital letters should be valid too

  #1099 opened 6 months ago by markbader
  0

• Investigate support for nd tifffiles with tifffile dependency

  #1029 opened 6 months ago by markbader
  0

• Add segment bounding boxes to annotation

  #1077 opened 6 months ago by normanrz
  0

• webknossos-libs pydoc has bad strings in it

  #1071 opened 6 months ago by pgunn
  2

• upload command on windows: backslashes on server, invalid dataset

  #1066 opened 6 months ago by fm3
  0

• Add layer_name to Dataset.from_images

  #1053 opened 7 months ago by normanrz
  0

• Data read via open_as_remote_dataset seems incomplete (black voxels close to bbox border)

  #1058 opened 7 months ago by fm3
  0

• dcm file ending should be recognized as dicom

  #1009 opened 8 months ago by fm3
  1

• BoundingBox should store channel axis information

  #1030 opened 8 months ago by markbader
  0