Pinned Repositories
abscr
bioinformatica-utn-2017
Bioinformatica UTN
dumpster-fire
NDPReader
Parse NDPA annotation files
s3-browser
S3 Browser
telegramas-paso-2017
Scraper for the telegrams from the Argentine PASO Elections on 13th of August of 2017
xp-json
X-Plane JSON
prete's Repositories
prete/NDPReader
Parse NDPA annotation files
prete/abscr
prete/dumpster-fire
prete/anndata
Annotated data.
prete/atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
prete/bioconda-recipes
Conda recipes for the bioconda channel.
prete/bsub_jupyter_lab
start jupyterlab python and R server on LSF farm5 node via bsub
prete/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
prete/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
prete/cellphonedb
prete/cellphonedb-data
prete/celltypist_wiki
Materials and scripts for building cell type encyclopedia table
prete/cellxgene
An interactive explorer for single-cell transcriptomics data
prete/configs
Config files used to define parameters specific to compute environments at different Institutions
prete/dotfiles
prete/fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
prete/geosketch
Geometry-preserving random sampling
prete/hello
Classic hello world script in Nextflow language
prete/instanseg
prete/jupyter-remote-desktop-proxy
Run a Linux Desktop on a JupyterHub
prete/jupyterhub-the-hard-way
Understanding JupyterHub by deploying it step by step
prete/librdata
Read and write R data frames from C
prete/lightning_mpirun_lsf
FUUUUUUUUUU
prete/nextflow
A DSL for data-driven computational pipelines
prete/openmicroscopy
OME (Open Microscopy Environment)
prete/sceasy
A package to help convert different single-cell data formats to each other
prete/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
prete/spatialdata-io
prete/staar_nf
prete/ULTRA
ULTRA Locates Tandemly Repetitive Areas