Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
bioimage_submission
Scripts for submitting data to bioimaging repositories
CAMERA
This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data
Classifier_mFam
ClassyFireR_mFam
container-batman
container-galaxy
Docker GALAXY image for PhenoMeNal and beyond
container-mtbls520
Code used in "Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes" and in MTBLS520
py3tag
Write tags to audio files (mp3, flac, and m4a are supported) based on their filenames
TriTag
Re-release of the abandoned software TriTag
korseby's Repositories
korseby/py3tag
Write tags to audio files (mp3, flac, and m4a are supported) based on their filenames
korseby/TriTag
Re-release of the abandoned software TriTag
korseby/container-mtbls520
Code used in "Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes" and in MTBLS520
korseby/bioimage_submission
Scripts for submitting data to bioimaging repositories
korseby/CAMERA
This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data
korseby/Classifier_mFam
korseby/ClassyFireR_mFam
korseby/container-metfamily
Dockerify R shiny-server
korseby/container-metfrag
initial work in progress
korseby/container-msnbase
Basic plotting, data manipulation and processing of MS-based Proteomics data.
korseby/container-mtbls709
Code for the study "Chemical diversity and classification of secondary metabolites in nine bryophyte species"
korseby/container-openmstoxcms
This is simple container for converting OpenMS to XCMS
korseby/container-tufuse
Docker container for Tufuse (Two Stage Exposure and Focus Blending Software)
korseby/create_image_stacks
Create image stacks based upon xmp label and filenames
korseby/galaxy-image-fusion
korseby/galaxy-image-stitching
korseby/iESTIMATE
Identifying ESsenTIal Molecular vAriables in Terrestrial Ecology
korseby/ISATab-DataSets
ISA-Tab descriptions of DataSets created and managed at the IPB
korseby/kml_remove_duplicates
Remove duplicate entries in KML files
korseby/korseby-scripts
Over the years I have made lots of shell scripts to improve speed and easiness of daily computer work.
korseby/MassBank-data
Official repository of open data MassBank records
korseby/MetFamily
Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here, we present a novel approach for the untargeted discovery of metabolite families offering a bird's eye view of metabolic regulation in comparative metabolomics. We implemented the presented methodology in the easy-to-use web application MetFamily to enable the analysis of comprehensive metabolomics studies for all researchers worldwide. MetFamily is available under http://msbi.ipb-halle.de/MetFamily/.
korseby/metfrag-galaxy
Metfrag for Galaxy
korseby/MFam-autoclass
Automated in-silico classification of MS2 spectra based on MetFamily
korseby/mtbls6827
Development of the Tenerife dataset from www.ebi.ac.uk/metabolights/MTBLS6827
korseby/raspberry_cellular_router_project
Build a cellular router with a Raspberry Pi Zero for the Internet of Things
korseby/RMassBank_mFam
korseby/scale_bar
Draw a scale bar on microscopic images
korseby/SESF-Fuse
SESF-Fuse: An Unsupervised Deep Model for Multi-Focus Image Fusion
korseby/Spectra
Low level infrastructure to handle MS spectra