IPB Halle

The Leibniz Institute of Plant Biochemistry provides unique research in chemical and biological sciences, including bio- and cheminformatics

Halle, Germany

Pinned Repositories

CRIMSy
Cloud Resource and Information Management System
Language:Java2 5 1263
FlavorMiner
Language:Jupyter Notebook3 0 00
GoldenMutagenesis
Support for rapid design of primers for amino acid exchanges and saturation mutagenesis by Golden Gate cloning.
Language:R5 5 173
metchem
Supporting infrastructure to import and update compound libraries in a pgchem ( https://github.com/ergo70/pgchem_tigress ) database
0 4 00
MetFamily
Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here, we present a novel approach for the untargeted discovery of metabolite families offering a bird's eye view of metabolic regulation in comparative metabolomics. We implemented the presented methodology in the easy-to-use web application MetFamily to enable the analysis of comprehensive metabolomics studies for all researchers worldwide. MetFamily is available under http://msbi.ipb-halle.de/MetFamily/.
Language:R10 11 557
MetFrag
Repo hosting the MetFrag website
Language:HTML10 6 215
MetFragR
R package for MetFrag
Language:R24 8 2214
MetFragRelaunched
Relaunch of the initial MetFrag project.
Language:Java17 11 7516
MetFragTraining
Training material for MetFrag usage
Language:JavaScript3 6 24
MolPaintJS
Pure HTML5 / JavaScript molecular editor / viewer
Language:JavaScript7 4 03

IPB Halle's Repositories

ipb-halle/MetFragRelaunched
Relaunch of the initial MetFrag project.
Language:Java17 11 7516
ipb-halle/MetFamily
Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here, we present a novel approach for the untargeted discovery of metabolite families offering a bird's eye view of metabolic regulation in comparative metabolomics. We implemented the presented methodology in the easy-to-use web application MetFamily to enable the analysis of comprehensive metabolomics studies for all researchers worldwide. MetFamily is available under http://msbi.ipb-halle.de/MetFamily/.
Language:R10 11 557
ipb-halle/MetFrag
Repo hosting the MetFrag website
Language:HTML10 6 215
ipb-halle/MolPaintJS
Pure HTML5 / JavaScript molecular editor / viewer
Language:JavaScript7 4 03
ipb-halle/GoldenMutagenesis
Support for rapid design of primers for amino acid exchanges and saturation mutagenesis by Golden Gate cloning.
Language:R5 5 173
ipb-halle/FlavorMiner
Language:Jupyter Notebook3 0 00
ipb-halle/MetFragTraining
Training material for MetFrag usage
Language:JavaScript3 6 24
ipb-halle/CRIMSy
Cloud Resource and Information Management System
Language:Java2 5 1263
ipb-halle/MolecularFaces
Java Server Faces UI components for chemistry and biochemistry
Language:Java2 5 02
ipb-halle/one-health
An interactive knowledge base for bioactive compound discovery
Language:TypeScript1 5 0
ipb-halle/RMassBank_mFam
Language:R1 9 122
ipb-halle/fasta-search-service
Reusable Docker container for sequence library search and alignment in relational databases with the FASTA program package
Language:Java0 5 01
ipb-halle/GoldenMutagenesisWeb
This repository is used for the development of the GoldenMutagenesis web application
Language:R0 5 331
ipb-halle/k8sTicket
An in-kubernetes load-balancing controller using a ticket-system
Language:Go0 3 80
ipb-halle/Show-And-Tell_Browser-Test-Automation
Language:Java01
ipb-halle/analysis_R-GECO1_CDPK-FRET
Synchronisation analysis of R-GECO1 and CDPK-FRET in guard cells
Language:R2 0
ipb-halle/biobyte
Training example for Biobyte
Language:R9 3
ipb-halle/cdk-inchi-to-svg
Convert an InChI string to a SVG file
Language:Java1
ipb-halle/CRIMSy-CI
Combined Chemistry DataBase Cartridges
Language:Dockerfile4 0
ipb-halle/fasta-playground
Test project for sequence library searching
Language:Java4 01
ipb-halle/iESTIMATE
Identifying ESsenTIal Molecular vAriables in Terrestrial Ecology
Language:HTML8 0
ipb-halle/ipb-charts-public
Packaging of applications for Kubernetes as Helm charts or Rancher Apps
Language:Smarty9 2
ipb-halle/IPBSticker
Hex Sticker for IPB, tools and Databases
Language:R9 01
ipb-halle/ISATab-DataSets
ISA-Tab descriptions of DataSets created and managed at the IPB
Language:JavaScript4 01
ipb-halle/libstemmer
mavenize snowball stemmer
Language:Java4 0
ipb-halle/MetFamily-testthat
to generate testthat file
Language:R1 0
ipb-halle/mFam-Classifier
Language:R2 0
ipb-halle/one-health-sources
Code repository for data collection, processing and integration for the One Health Platform project
2 0
ipb-halle/SeqProc
A simple example wrapper for a command line tool with graphical interface.
Language:Java11 0
ipb-halle/specktackle
Fork of https://bitbucket.org/sbeisken/specktackle.git
Language:JavaScript4 0