dsudar

I'm a scientist working on imaging and image analysis in cancer research.

Pinned Repositories

ometiff_converters
A set of convenient tools to convert HTAN level1 files to level2 OME-TIFF files
Language:Python10
ashlar
Forked to add some metadata handling
Language:Python00
cellpose
a generalist algorithm for cellular segmentation
Language:Jupyter Notebook00
ceph_scripts
A few OHSU-specific scripts to archive and retrieve data from a ceph object storage system
Language:Rich Text Format00
deepcell-tf
Deep Learning Library for Single Cell Analysis
Language:Python00
MicroscopyMetadata4DNGuidelines
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
00
omeroinplaceimporter
A python GUI for inplace import from a file server to an OMERO server
Language:Python00
OMEROscripts
Various useful scripts for OMERO
Language:Python01
stardist
StarDist - Object Detection with Star-convex Shapes
Language:Python00
deepcell-tf
Deep Learning Library for Single Cell Analysis
Language:Python40491

dsudar/ashlar
Forked to add some metadata handling
dsudar/deepcell-tf
Deep Learning Library for Single Cell Analysis
Language:Python
dsudar/stardist
StarDist - Object Detection with Star-convex Shapes
Language:Python
dsudar/cellpose
a generalist algorithm for cellular segmentation
dsudar/omeroinplaceimporter
A python GUI for inplace import from a file server to an OMERO server
Language:Python
dsudar/ometiff_converters
A set of convenient tools to convert HTAN level1 files to level2 OME-TIFF files
Language:Python1
dsudar/ceph_scripts
A few OHSU-specific scripts to archive and retrieve data from a ceph object storage system
Language:Rich Text Format
dsudar/MicroscopyMetadata4DNGuidelines
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
dsudar/OMEROscripts
Various useful scripts for OMERO
Language:Python1