ltalignani

Université MontpellierMontpellier

Pinned Repositories

bioformats2raw
Bio-Formats image file format to raw format converter
Language:Java76 18 8934
alimanfoo.github.io
Alistair Miles' blog
Language:Jupyter Notebook10
PIMGAVir-under-review
PIpeline for MetaGenomic Analysis of Viral reads from 2nd generation sequencer
Language:Shell00
SHAVE
SHort-read Alignment pipeline for VEctor - with UnifiedGenotyper
Language:Python00
SHAVE-slurm
SHort-read Alignment Pipeline for VEctors - cluster version
Language:Python00
SHAVE2
SHort-read Alignment Pipeline for VEctors - v.2 with GATK's HaplotypeCaller
Language:Jupyter Notebook00
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
Language:Python234 9 26143
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML2.2k 19 1.7k530
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Language:Python209 9 128177
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
Language:Python1.4k 43 766269

ltalignani/alimanfoo.github.io
Alistair Miles' blog
Language:Jupyter Notebook10
ltalignani/PIMGAVir-under-review
PIpeline for MetaGenomic Analysis of Viral reads from 2nd generation sequencer
Language:Shell00
ltalignani/SHAVE
SHort-read Alignment pipeline for VEctor - with UnifiedGenotyper
Language:Python00
ltalignani/SHAVE-slurm
SHort-read Alignment Pipeline for VEctors - cluster version
Language:Python00
ltalignani/SHAVE2
SHort-read Alignment Pipeline for VEctors - v.2 with GATK's HaplotypeCaller
Language:Jupyter Notebook00