snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Python
Issues
- 3
ENSEMBL-SEQUENCE does not work for all species
#3070 opened by lczech - 4
change to earlier docs versions on readthedocs
#2392 opened by nnneeennn - 6
Mutect2 issue that raises false positive calls by 20%
#991 opened by tdayris - 3
`deepvariant`: conda environment not installable
#2296 opened by votti - 4
samtools version is wrong in `0.15.3/bio/bwa/mem/`.
#3004 opened by manji2001 - 1
- 2
snakemake wrapper mirror
#2988 opened by WWz33 - 5
bwa-memx_index meme wrapper expects specific file name?
#1344 opened by Phlya - 3
Wrappers for Google Batch
#1875 opened by vsoch - 12
salmon_quant wrapper shell script bug
#2939 opened by radio1988 - 0
adding a cff file for citing the project
#2935 opened by cmeesters - 1
NameError: name 'PosixPath' is not defined
#2793 opened by odetteg - 13
Error in snakemake wrapper goes not to log file
#885 opened by SilasK - 2
CI: autobump workflow never finishes
#1789 opened by fgvieira - 2
building the docs on a fork doesn't work
#1799 opened by Maarten-vd-Sande - 7
- 5
the output files generated by using STAR in snakemake-wrappers should be more comprehensive.
#2756 opened by zhongzheng1999 - 1
STAR index wrapper with GFF
#2724 opened by andreott - 6
Hisat2 align on large index
#2537 opened by andreott - 0
- 3
- 8
- 1
- 3
specify Python version in yaml file
#499 opened by gernophil - 1
- 6
bwa-mem2 incorrect index
#522 opened by lczech - 5
Example Snakemake rule wrapper attribute for DADA2_QUALITY_PROFILES is incorrect
#622 opened by mtmcgowan - 2
BUG: BWA-MEM wrapper - Passing command line argument -O in extra triggers wrapper cancel
#624 opened by KuechlerO - 10
- 0
- 3
The ensembl-annotation uses the wrong download URL
#1127 opened by user-tq - 4
Encountered network problems according to the tutorial
#1113 opened by user-tq - 1
MultiQC wrapper env issue with imp
#1874 opened by niekwit - 3
- 1
- 1
Generic subfolder?
#1725 opened by fgvieira - 3
STAR wrapper allowing different output names
#1740 opened by supermaxiste - 4
Possible bowtie2 align bug
#1396 opened by smped - 3
Trim galore inconsitent output filenames
#967 opened by SilasK - 6
Qualimap remote package is not installed
#975 opened by ltalignani - 6
- 0
MACS2: support --extsize with fragment size input file
#1238 opened by ftabaro - 1
Salmon Quant wrapper throwing segmentation fault
#1167 opened by oligomyeggo - 1
Error while testing bbduk
#1129 opened by fgvieira - 1
Sickle se/pe
#1125 opened by incardon - 3
- 2
Error: Failed to open source file https://github.com/snakemake/snakemake-wrappers/raw/v1.19.0/bio/bio/multiqc/environment.yaml
#884 opened by nicolau - 1
wrapper need to support native code
#770 opened by wenyuhaokikika - 14
bwa-mem2 mem wrapper doesn't work
#541 opened by alyazeeditalal - 0