semenko
Tiny Human Wrangler | Physician Scientist (MD, PhD) | @mcwdsi via @mit / Brigham and Women's / WashU
Medical College of Wisconsin Milwaukee
Pinned Repositories
https-everywhere
A browser extension that encrypts your communications with many websites that offer HTTPS but still allow unencrypted connections.
aldine-powershell-computer-config
Intune-deployed Powershell configuration for Azure Active Directory-joined machines with OneDrive folder redirection.
celfie-simplified
A quick overhaul of CelFiE — cfDNA cell type of origin estimation
chrome-force-pdf-inline
A Chrome extension to force PDFs to render inline (overrides Content-Disposition: attachment).
chrome-limit-history-lifetime
Persistent history entries are annoying. This Chrome extension limits history entries to a user-adjustable value.
chrome-status-monitor-for-google-wifi
A Chrome Extension to monitor Google Wifi (or OnHub) status.
serpent-methylation-pipeline
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
sts-risk-calculator-cli
A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.
semenko's Repositories
semenko/chrome-force-pdf-inline
A Chrome extension to force PDFs to render inline (overrides Content-Disposition: attachment).
semenko/serpent-methylation-pipeline
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
semenko/aldine-powershell-computer-config
Intune-deployed Powershell configuration for Azure Active Directory-joined machines with OneDrive folder redirection.
semenko/chrome-limit-cookie-lifetime
Persistent cookies are annoying. This Chrome extension limits cookie lifetime to a user-adjustable value.
semenko/sts-risk-calculator-cli
A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.
semenko/celfie-simplified
A quick overhaul of CelFiE — cfDNA cell type of origin estimation
semenko/gordon-lab-enveloper
Mass spec partial isotopic enrichment predictions using isodist.
semenko/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
semenko/bioconda-recipes
Conda recipes for the bioconda channel.
semenko/biscuit
BISulfite-seq CUI Toolkit
semenko/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
semenko/cfSort
semenko/dotfiles
Refreshed personal dotfiles.
semenko/ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
semenko/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
semenko/mmtest
semenko/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
semenko/pynecone-examples
A repository full of Pynecone example apps.
semenko/pyscaffold
🛠 Python project template generator with batteries included
semenko/python-template-repo
Template repository for Python projects
semenko/scvi-tools
Deep probabilistic analysis of single-cell omics data
semenko/semenko
semenko/semenko.github.io
My personal homepage.
semenko/semenkovich-lab
semenko/semenkovich.com
Static homepage for github pages.
semenko/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
semenko/t-rec-rs
Blazingly fast terminal recorder that generates animated gif images for the web written in rust
semenko/tabnet
PyTorch implementation of TabNet paper : https://arxiv.org/pdf/1908.07442.pdf
semenko/wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
semenko/xlmhg
XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.