supermaxiste
Biomedical Data Engineer @ SDSC | Bioinformatician | Open Research Data | Reproducibility | FAIR principles
University of ZurichZurich
Pinned Repositories
ARPEGGIO
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
ARPEGGIO_paperAnalyses
All the scripts used to evaluate EAGLE_RC and run ARPEGGIO on example datasets, from the official ARPEGGIO paper
BioCypher
A unifying framework for biomedical research knowledge graphs
EarlyPolyploidDNAMethylation
RemappingAssemblies
We would like to improve our assemblies by mapping them to another (almost) chromosome-level assembly.
snakemake-workflow-template
A template for standard compliant snakemake-workflows
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
SPHN_framework_testing
This repository includes the steps to complete a task related to semantization of clinical data within the SPHN framework
stefan.github.io
supermaxiste
supermaxiste's Repositories
supermaxiste/ARPEGGIO
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
supermaxiste/BioCypher
A unifying framework for biomedical research knowledge graphs
supermaxiste/ARPEGGIO_paperAnalyses
All the scripts used to evaluate EAGLE_RC and run ARPEGGIO on example datasets, from the official ARPEGGIO paper
supermaxiste/EarlyPolyploidDNAMethylation
supermaxiste/RemappingAssemblies
We would like to improve our assemblies by mapping them to another (almost) chromosome-level assembly.
supermaxiste/snakemake-workflow-template
A template for standard compliant snakemake-workflows
supermaxiste/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
supermaxiste/SPHN_framework_testing
This repository includes the steps to complete a task related to semantization of clinical data within the SPHN framework
supermaxiste/stefan.github.io
supermaxiste/supermaxiste
supermaxiste/testMemoryBug
supermaxiste/topGO-featArabidopsis
Enrichment Analysis for Gene Ontology. This version has "enrichment_barplot" function added to the package and a change to allow printGenes to be used with ath1121501.db