Pinned Repositories
3t-seq
A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis
trim66-testis
Analysis code supporting the publication "Trim66’s paternal deficiency causes intrauterine overgrowth"
2022-06-07-wfd-dc-online
Course focuses on the fundamental tools and methods for data entry, cleaning, analysis and visualisation using spreadsheets, OpenRefine and Python
aoc-2021
Advent of code 2021
aoc-2023
Advent of Code 2023
aoc2022
My Solutions for Advent of code 2022
luxus-singularity
A Singularity container for the LuxUS tool
MethylSnake
A Snakemake pipeline for RRBS data analysis
singularity-coderefinery2020
An extended JupyterLab container
snakemake-template
This is a repository with template for a Snakemake pipeline
ftabaro's Repositories
ftabaro/MethylSnake
A Snakemake pipeline for RRBS data analysis
ftabaro/2022-06-07-wfd-dc-online
Course focuses on the fundamental tools and methods for data entry, cleaning, analysis and visualisation using spreadsheets, OpenRefine and Python
ftabaro/aoc-2021
Advent of code 2021
ftabaro/aoc-2023
Advent of Code 2023
ftabaro/aoc2022
My Solutions for Advent of code 2022
ftabaro/bioconda-recipes
Conda recipes for the bioconda channel.
ftabaro/BS_EMSeq
ftabaro/CellAnn_shinyapp
CellAnn
ftabaro/dotnix
My NixOS configurations
ftabaro/EMBL-DC-24
EMBL Data Carpentries workshop 2024
ftabaro/ftabaro
My personal repository
ftabaro/generator-snakemake
A Yeoman generator for Snakemake pipelines
ftabaro/glosario
A multilingual glossary for computing and data science terms.
ftabaro/hpcigv
Singularity container for custom IGV webapp for HPC use
ftabaro/lc-python-intro
Python Intro for Libraries
ftabaro/multi_padlock_design
Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling
ftabaro/nextflow_tutorial
ftabaro/peppy
Project metadata manager for PEPs in Python
ftabaro/RCADE2
Recognition Code-Assisted Discovery of regulatory Elements v2
ftabaro/research-support-network.github.io
ftabaro/rich
Rich is a Python library for rich text and beautiful formatting in the terminal.
ftabaro/SalmonTE
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
ftabaro/self-hosted-runners-test
ftabaro/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
ftabaro/snakemake-lang-vscode-plugin
Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.
ftabaro/snakemake-pep-example
A simple tutorial on PEP and Snakemake
ftabaro/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
ftabaro/swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.
ftabaro/TEpeaks
Package for including repetitive regions in peak calling from ChIP-seq datasets
ftabaro/TEsmall
A pipeline for profiling TE-derived small RNAs