Pinned Repositories
citrus
Citrus Development Code
CROPS545_HW4_GLM_GWAS
Statistical Genomics, Homework 4, an R package that performs GWAS by GLM, includes both covariate, PCA, and PCA cluster effects
CropSci545
Has mtmcgowan's custom functions for CropSci545
CyberThumb
An arduino based houseplant sensor
FarmCPU
An unofficial R package that includes FarmCPU functions
GEMmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
GGcall
An R package for calling SNP chip genotypes with Gaussian mixture models
hello-world
github tutorial
masterBLASTer
A SLURM tool for performing parallel BLAST searches
StatGen_Playground
This repository contains a series of Rmarkdown notebooks exploring concepts in statistical genomics
mtmcgowan's Repositories
mtmcgowan/masterBLASTer
A SLURM tool for performing parallel BLAST searches
mtmcgowan/citrus
Citrus Development Code
mtmcgowan/CROPS545_HW4_GLM_GWAS
Statistical Genomics, Homework 4, an R package that performs GWAS by GLM, includes both covariate, PCA, and PCA cluster effects
mtmcgowan/CropSci545
Has mtmcgowan's custom functions for CropSci545
mtmcgowan/CyberThumb
An arduino based houseplant sensor
mtmcgowan/FarmCPU
An unofficial R package that includes FarmCPU functions
mtmcgowan/GEMmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
mtmcgowan/GGcall
An R package for calling SNP chip genotypes with Gaussian mixture models
mtmcgowan/hello-world
github tutorial
mtmcgowan/StatGen_Playground
This repository contains a series of Rmarkdown notebooks exploring concepts in statistical genomics
mtmcgowan/hort503
Contains coursework for Hort503: Introduction to Computing for Data Science
mtmcgowan/Kids_guide_to_minecraft_FTB
A simple markdown guide to setting up and starting to use Minecraft FTB
mtmcgowan/KINC.R
Supplemental R package for KINC
mtmcgowan/lab5
Demo repo for CropSci545 Lab5
mtmcgowan/LitterSim
Simulates progeny phenotypes from parental phenotypes and genetic rules
mtmcgowan/NewmanNetworks
This project contains R notebook files that work through Mark Newman's Networks 2nd Edition textbook
mtmcgowan/PolySNPclust
An R package for calling polyploid SNP chip data
mtmcgowan/snakemake-workflow-template
A template for standard compliant snakemake-workflows
mtmcgowan/swc-wsu-2017-04-07
Materials for R Carpentry Workshop
mtmcgowan/test-datasets
Test data to be used for automated testing with the nf-core pipelines
mtmcgowan/Test1
mtmcgowan/Test2
mtmcgowan/Test3
mtmcgowan/ZZlabtest
Test repo for individual report