Pinned Repositories
accucor
archaic_match
bedtools-galaxy
bioconda-recipes
Conda recipes for the bioconda channel.
cutadapt
cutadapt removes adapter sequences from DNA sequencing reads
ElMaven
LC-MS data processing engine for large-scale metabolomic experiments.
galaxy_tools
Wrappers for galaxy tools
homebrew
The missing package manager for OS X.
msg
Multiplexed Shotgun Genotyping
tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
lparsons's Repositories
lparsons/accucor
lparsons/reference_processing
Process reference from NCBI for use with various RNA-Seq tools. Creates Fasta, GFF, GTF files. Currently written to work with bacteria.
lparsons/tracebase-sample-list
List sample names from directory of AccuCor or Isocor files
lparsons/archaic_match
lparsons/bioconda-recipes
Conda recipes for the bioconda channel.
lparsons/ElMaven
LC-MS data processing engine for large-scale metabolomic experiments.
lparsons/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
lparsons/blog
syndicated blog for research software engineer stories and experiences
lparsons/bsgenomeforge
Custom BSGenome packages for Bioconductor
lparsons/cbutils
Miscellaneous Utilities
lparsons/dotfiles
lparsons/galaxytools
:microscope::books: Galaxy Tool wrappers
lparsons/kas-seq-workflow
KAS-Seq Analysis Workflow
lparsons/lparsons.github.io
lparsons/MitoRiboSeq
Codes for processing mitochondrial ribosome profiling data
lparsons/pf15-smallrna-rseto
Pf15 Small RNA-Seq analysis for Murphy Lab - Renee Seto Apr 2, 2024
lparsons/plastid
Position-wise analysis of sequencing and genomics data
lparsons/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
lparsons/slurm-tests
Scripts to test slurm
lparsons/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
lparsons/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
lparsons/super-duper-journey
lparsons/TigerFISH
Fork of FISH Image Analysis used at Princeton
lparsons/TM3Seq-Pipeline
lparsons/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
lparsons/tools-devteam
Contains a set of Galaxy Tools mostly written by the Galaxy Team.
lparsons/us-rse-logo
logos, templates, and related resources
lparsons/usrse.github.io
US RSE umbrella web page
lparsons/worm-functional-connectivity
lparsons/WormCount
Estimate the count of C. Elegans from an image of a plate.