/bsgenomeforge

Custom BSGenome packages for Bioconductor

Primary LanguageShellArtistic License 2.0Artistic-2.0

BSGenome custom references

Repository of scripts and seed files used to generate custom BSGenome packages.

Usage

  1. For each genome, there is a subdirectory <REFNAME>.

  2. Check the seed file to determine where to download the source data and update the seqs_srcdir: attribute to be the absolute path to the directory where you downloaded the source data file(s).

3 In each subdirectory, there is a <REFNAME>_forge.sh script. Running this script will build and install the package.

For more inforamtion on how this works, see the BSGenomeForge documentation.