Pinned Repositories
ImcSegmentationSnakemake
The repository for the Snakemake implementation of the ImcSegmentationPipeline
imctools
Tools to handle IMC data
neighbouRhood
Adds an R implementation for the HistoCAT neightbourhood analysis that runs from CellProfiler output.
SpheroidPublication
This contains the workflows to reproduce all analyses from the Spheroid paper.
CellProfiler
An open-source application for biological image analysis
ilastik
ilastik-shell, applets, and workflows to string them together.
votti's Repositories
votti/AnnotationHub
Client for the Bioconductor AnnotationHub web resource
votti/bokeh
Interactive Data Visualization in the browser, from Python
votti/CellProfiler
CellProfiler is open-source cellular image analysis software.
votti/covid-viz
Exploring covid data
votti/covid_19
COVID19 case numbers Cantons of Switzerland and Principality of Liechtenstein (FL) - case numbers include persons tested in the respective area. The data is updated at best once a day (times of collection and update may vary). Start with the README.
votti/DMRcate-devel
devel git for DMRcate
votti/ExperimentHub
Client to access ExperimentHub resources
votti/katib
Repository for hyperparameter tuning
votti/katib-exploration
votti/MuData
MuData-compatible storage for bioconductor's MultiAssayExperiment
votti/mygithubpage
votti/nbreport
votti/openslide
C library for reading virtual slide images
votti/openslide-python
Python bindings to OpenSlide
votti/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
votti/pipelines
Machine Learning Pipelines for Kubeflow
votti/precommit
pre-commit hooks for R projects
votti/pybis
votti/PyLaTeX
A Python library for creating LaTeX files
votti/pyload
The free and open-source Download Manager written in pure Python
votti/readme_renderer
Safely render long_description/README files in Warehouse
votti/Rphenograph
Rphenograph: R implementation of the PhenoGraph algorithm
votti/RPi-Jukebox-RFID
A Raspberry Pi jukebox, playing local music, podcasts, web radio and streams triggered by RFID cards, web app or home automation. All plug and play via USB. GPIO scripts available.
votti/rstudio
RStudio is an integrated development environment (IDE) for R
votti/singularity-builds
My repository for singularity hub containers.
votti/snakemake-renv-quarto
An example repository for combining snakemake, renv and quarto
votti/travelpod2pdf
A script that pulls all the information from travelpod in order to create a pdf
votti/vz-varia
Various example scripts
votti/xtiff
A tiny Python library for writing multi-channel TIFF stacks.
votti/zenodo_get
Zenodo_get: Downloader for Zenodo records