votti/snakemake-renv-quarto

An example repository for combining snakemake, renv and quarto

Snakemake workflow: snakemake-renv-quarto-example

A Snakemake workflow to demonstrate how to use quarto + renv with Snakemake

Usage

The usage of this workflow is described in the Snakemake Workflow Catalog.

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) snakemake-renv-quartository and its DOI (see above).

TODO

• Replace votti and snakemake-renv-quarto everywhere in the template (also under .github/workflows) with the correct snakemake-renv-quarto name and owning user or organization.
• Replace snakemake-renv-quarto-example with the workflow name (can be the same as snakemake-renv-quarto).
• Replace Example workflow how quarto and renv may be used. with a description of what the workflow does.
• The workflow will occur in the snakemake-workflow-catalog once it has been made public. Then the link under "Usage" will point to the usage instructions if votti and snakemake-renv-quarto were correctly set.