Image Data Resource

The Image Data Resource (IDR) is an online, public data repository seeks to store, integrate and serve image datasets from published scientific studies

Pinned Repositories

celery-example
Example of using Celery as a lightweight distributed computing framework
Language:Python4 3 26
deployment
Deployment infrastructure for the Image Data Resource
Language:Python13 6 4214
idr-metadata
Curated metadata for all studies published in the Image Data Resource
Language:Python14 8 3924
idr-notebooks
Jupyter Notebooks for the Image Data Resource
Language:Jupyter Notebook18 8 1320
idr-py
Library for accessing the Image Data Resource
Language:Python4 6 76
idr-utils
Utility scripts for managing IDR submissions
Language:Python2 7 76
idr.openmicroscopy.org
Source for the IDR static website.
Language:HTML4 7 1416
idr0042-nirschl-wsideeplearning
Metadata files for the idr0042 submission
Language:Python3 6 16
idr0062-blin-nuclearsegmentation
Metadata files for the idr0062 submission
Language:Python2 7 05
idr0081-georgi-adenovirus
Metadata files for the idr0081 submission
Language:Python2 7 02

Image Data Resource's Repositories

IDR/idr-metadata
Curated metadata for all studies published in the Image Data Resource
Language:Python14 8 3924
IDR/deployment
Deployment infrastructure for the Image Data Resource
Language:Python13 6 4214
IDR/idr.openmicroscopy.org
Source for the IDR static website.
Language:HTML4 7 1416
IDR/idr-utils
Utility scripts for managing IDR submissions
Language:Python2 7 76
IDR/aspera-client-docker
Docker image for downloading IDR datasets
Language:Dockerfile1 5 05
IDR/idr-gallery
Language:JavaScript1 2 142
IDR/idr0094-ellinger-sarscov2
Language:Jupyter Notebook1 6 24
IDR/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Language:Java2 3
IDR/idr-log-analysis
Log analysis and visualisation for the Image Data Resource (IDR)
Language:Dockerfile3 02
IDR/idr0070-kerwin-hdbr
Language:Python7 03
IDR/idr0092-ostrop-organoid
Language:Python6 03
IDR/idr0114-lindsay-hdbr
Language:Python6 11
IDR/idr0125-way-cellpainting
Language:Shell6 41
IDR/idr0133-dahlin-cellpainting
Language:Python5 0
IDR/idr0138-lohoff-seqfish
Language:Python
IDR/idr0143-herbst-coculture
Language:Python5 0
IDR/idr0147-kuo-kidney3d
5 0
IDR/idr0150-friedman-cafs
Language:Python5 0
IDR/idr0154-queen-hdbr
5 0
IDR/idr0155-fu-alphasynuclein
Language:Python5 0
IDR/idr0157-peters-bryophytes
Language:Nextflow5 0
IDR/idr0158-radtke-lymphoma
Language:Python
IDR/idr0161-yayon-thymus
IDR/idr0163-greenwald-tnbc
Language:Python
IDR/mkngff_upgrade_scripts
Language:PLpgSQL6 0
IDR/ome-ngff-samples
A catalog of all public OME-NGFF representative samples derived from IDR data
Language:HTML2 73
IDR/omero-mkngff
Plugin to swap OMERO filesets with NGFF
Language:Python5 62
IDR/repos
A super-module of all the repositories used for building the IDR
Language:Shell6 02
IDR/upptime
Uptime monitor and status page for IDR, powered by @upptime
Language:Markdown6 5.3k
IDR/vocabulary
2 02