Pinned Repositories
2022univr-medbioinfo
Teaching material for spatial transcriptomics session, Medical Bioinformatics, UNIVR
awesome_spatial_omics
tools and notes for spatial omics
ciclo
A functional training loops library for JAX
pydantic-ome-ngff
Pydantic models for OME-NGFF
SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
spatialdata-sandbox
napari-spatialdata
Interactive visualization of spatial omics data
spatialdata
An open and interoperable data framework for spatial omics data
squidpy
Spatial Single Cell Analysis in Python
moscot
Multi-omic single-cell optimal transport tools
giovp's Repositories
giovp/spatialdata-sandbox
giovp/2022univr-medbioinfo
Teaching material for spatial transcriptomics session, Medical Bioinformatics, UNIVR
giovp/pydantic-ome-ngff
Pydantic models for OME-NGFF
giovp/SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
giovp/awesome_spatial_omics
tools and notes for spatial omics
giovp/ciclo
A functional training loops library for JAX
giovp/DUE
Code for "On Feature Collapse and Deep Kernel Learning for Single Forward Pass Uncertainty".
giovp/eggplant
giovp/giovp.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
giovp/multiscale-spatial-image
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
giovp/ifom-tutorials-2023
giovp/lamindb
Manage R&D data and analyses.
giovp/lnschema-lamin1
giovp/napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
giovp/napari-spatialdata-feedstock
A conda-smithy repository for napari-spatialdata.
giovp/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
giovp/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
giovp/ott
Optimal Transport tools implemented with the JAX framework, to get auto-diff, parallel and jit-able computations.
giovp/paste
Probabilistic Alignment of Spatial Transcriptomics Experiments
giovp/Perturb-OT
Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.
giovp/random-promoter-dream-challenge-2022
giovp/schist
An interface for Nested Stochastic Block Model for single cell analysis
giovp/spatial-alignment
Alignment of spatial genomics data using deep Gaussian processes
giovp/spatial-image
A multi-dimensional spatial image data structure for scientific Python.
giovp/spatial-scripts
giovp/SpatialData
giovp/squidpy-feedstock
A conda-smithy repository for squidpy.
giovp/Tangram
Spatial alignment of single cell transcriptomic data.
giovp/vitessce-python
Python API and Jupyter widget for Vitessce
giovp/xarray-schema
Schema validation for Xarray objects